PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_05.2491
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family AP2
Protein Properties Length: 272aa    MW: 30256.8 Da    PI: 9.9293
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_05.2491genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.41.1e-15116175155
                            AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                    s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  evm.model.AsparagusV1_05.2491 116 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 175
                                    57*******************666664477446*************************98 PP
2AP224.47.1e-08218252138
                            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 
                                    s y+GV+++++ grW A+I  +     +k  +lg+f  
  evm.model.AsparagusV1_05.2491 218 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFML 252
                                    57****************988532...5*******976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MDMDTSQNWL AFSLANPNPY LLQHYSSVPH HGAVDASGDG MGPKLEDFLG GGGEPLRYTG  60
GEAEPNGIYG DSDLKSIAAG FLRGSPAAEQ EDDVAKAVVP ATEQRKAVDT FGQRTSIYRG  120
VTRHRWTGRY EAHLWDNSCR REGQSRKGRQ VYLGGYDKEE KAARAYDLAA LKYWGPTTTT  180
NFPVSNYEKE LEEMKNMTRQ EFVASLRRKS SGFSRGASIY RGVTRHHQHG RWQARIGRVA  240
GNKDLYLGTF MLIQTAAAPQ AHKKKRQRPT T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263268KKKRQR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-107AP2 family protein