PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.AsparagusV1_05.1347 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 160aa MW: 18587.5 Da PI: 8.2162 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 6.7e-17 | 33 | 76 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ +++ ++G++ W++Iar ++ gRt++++k++w++ evm.model.AsparagusV1_05.1347 33 RGNITPEEQLLIMELHSRWGNR-WSKIARQLP-GRTDNEIKNYWRT 76 7999******************.*********.***********96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 160 aa Download sequence |
MARVFGIHLR NQQRTGKSCR LRWLNYLRPD VRRGNITPEE QLLIMELHSR WGNRWSKIAR 60 QLPGRTDNEI KNYWRTRIQK KAKQGDSFEY QNQTMTDDAS TSHSNGMEEC SSSQLNYQMQ 120 PNMDNSDAFG APSYNTDSSE SFWNIDEFWS MNPLNGAGD* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G27810.1 | 1e-49 | MYB family protein |