PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_04.970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 173aa MW: 19122.5 Da PI: 10.4439 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 85.3 | 2.2e-26 | 49 | 169 | 111 | 232 |
GAGA_bind 111 lqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskae 190 + ++ep+ e s++e + + p+++ +e+++k+k+ + + ak+ ++ka ++k+ ++ + k+k s ++ k+e evm.model.AsparagusV1_04.970 49 SSIVNEPDNEASSMEfPWFPQRSFFSPTRDPSPEHTKKNKEIEAKPAKVRIATKALRPKEPKKPP-AKKKGTSI-STGKRE 127 34444455555555422223445556777777777777777778888888888888888844334.33333333.689*** PP GAGA_bind 191 kksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqS 232 k+++d +++g + D s++P+PvC+CtG++rqCY+WG+GGWqS evm.model.AsparagusV1_04.970 128 KRNQDATIEGTTQDFSGVPAPVCTCTGVSRQCYRWGSGGWQS 169 *****************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence |
MEGKGRFSAR KWVFSDQTNP SNLASSVPEG NAPGYQPSFL KMSAYTNRSS IVNEPDNEAS 60 SMEFPWFPQR SFFSPTRDPS PEHTKKNKEI EAKPAKVRIA TKALRPKEPK KPPAKKKGTS 120 ISTGKREKRN QDATIEGTTQ DFSGVPAPVC TCTGVSRQCY RWGSGGWQSY ML* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35550.3 | 1e-17 | BBR-BPC family protein |