PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.888
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 264aa    MW: 29481.8 Da    PI: 7.5956
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.888genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-161562148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g W++eEd++l ++v ++G g+W++++   g+ R +k+c++rw +yl
  evm.model.AsparagusV1_04.888 15 KGLWSPEEDQRLRNYVLKHGHGCWSSVPVNAGLQRNGKSCRLRWINYL 62
                                  678*******************************************97 PP
2Myb_DNA-binding491.4e-1568113148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg ++ +E+e+  +++  lG++ W+ Ia +++ gRt++++k++w++yl
  evm.model.AsparagusV1_04.888  68 RGMFSHDEEEIVMKLHVTLGNK-WSQIAMHLP-GRTDNEVKNYWNSYL 113
                                   7889******************.*********.*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MGCRTCEKPK VNYRKGLWSP EEDQRLRNYV LKHGHGCWSS VPVNAGLQRN GKSCRLRWIN  60
YLRPGLKRGM FSHDEEEIVM KLHVTLGNKW SQIAMHLPGR TDNEVKNYWN SYLKKRVNPH  120
ASSSKSKDST NQNINQITAS ESVDSGRSVS VNTDQGLSKG TSQTSALPKI IFADWLSTDH  180
ALGASSCQWD SNPQTNQGFQ EGIFPVHGQS GGDFLHGFLD SNVYGELQLQ FQNESQLQGG  240
ELFDLFSMGE ISGDLNVNND VIY*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.12e-62MYB family protein