PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_04.403 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | MYB | ||||||||
Protein Properties | Length: 315aa MW: 35644.8 Da PI: 4.7489 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.2 | 3.9e-13 | 22 | 67 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W eEde l+++v+++G+++W++I ++ + Rt+k+c++rw + evm.model.AsparagusV1_04.403 22 KGPWMSEEDEVLLEYVQRHGPRDWSSIRSKGLLPRTGKSCRLRWVN 67 79*************************8876677**********87 PP | |||||||
2 | Myb_DNA-binding | 46.2 | 1.1e-14 | 78 | 118 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++T+eE+ + +++ +++G++ W++Ia +++ gRt++++k++w evm.model.AsparagusV1_04.403 78 KFTPEEERIVIELQARFGNK-WARIATYLP-GRTDNDVKNFWS 118 79******************.*********.***********5 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence |
MQGAAKVSSK RVNDRCGATT RKGPWMSEED EVLLEYVQRH GPRDWSSIRS KGLLPRTGKS 60 CRLRWVNKLQ PNLKTGCKFT PEEERIVIEL QARFGNKWAR IATYLPGRTD NDVKNFWSTR 120 QKRLARMLQI PLPSKPSKNQ SKMPLTNDPP TFEVASLDLI PFEEESVESN QISYVDDDNR 180 EQRSSHQMPD DYMPNPTMPL LEPQLNWEPP QLQLENLPNP ELDFPLLLES SDHLIQQFEG 240 TGLGGNSSFL QIITENSPFL GLGDGTSGVK IEGHSAGGAP DSFFDDFPVD MLDFMEQXXI 300 GRVWLLPDIL LELN* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60460.1 | 7e-63 | MYB family protein |