PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_04.357

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB_related

Protein Properties

Length: 538aa MW: 58269.9 Da PI: 9.7681

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_04.357	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.9	1.5e-10	202	247	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 r+ WT+eEd l+ av+++G g+W tI + Rt+ q+ rw+ evm.model.AsparagusV1_04.357 202 RKVWTEEEDMELIAAVQKFGEGNWVTILKGAFkHDRTAAQLSQRWH 247 789************************999999*******97 PP

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence
MAMNEKKRRK IKGIISEDDT ITLLQRYDAT IILTLLQEVA QSAADAKFDW KTIVERSSSG 60 ISNPREYQLL WRHLAYREPL LEDIDGAEPA DDDSDLEFEL EISPPARGTD TSQAAEYVKG 120 LMPACFSSEC GRQIDSAAEV PSAVEAARNS STSNSTRADK DNIISADRSN ETLGGVPGNK 180 KRRVEVFKGN KTTGAEPASK KRKVWTEEED MELIAAVQKF GEGNWVTILK GAFKHDRTAA 240 QLSQRWHILK KRQSNSNARC SIKQSEALDA TRLALGRALN TSMVKSFSVK NAGTIQIKVS 300 EACKPLPPQT PNLLQETRKI SSEASNLPQE APKGNVSPSN KLESIPENLP ALVKPPATGN 360 SPIKSVETQQ LPQEASNLLP VKGKVTPLNK PQSNSMIKAA AVAAGGRVLA ASAAALLTAT 420 QLKNAVHIRV GSSQLMSKAN KGQKQFNSHH SPPFARPPPL GNLLKISNGL MASSNLKRDS 480 RSLAGNAKKT NVKETSDDKG DGMKLDCVLN QDQGRSLDVG EEDRRVEKDG DVTEKQV*

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence

MAMNEKKRRK IKGIISEDDT ITLLQRYDAT IILTLLQEVA QSAADAKFDW KTIVERSSSG  60
ISNPREYQLL WRHLAYREPL LEDIDGAEPA DDDSDLEFEL EISPPARGTD TSQAAEYVKG  120
LMPACFSSEC GRQIDSAAEV PSAVEAARNS STSNSTRADK DNIISADRSN ETLGGVPGNK  180
KRRVEVFKGN KTTGAEPASK KRKVWTEEED MELIAAVQKF GEGNWVTILK GAFKHDRTAA  240
QLSQRWHILK KRQSNSNARC SIKQSEALDA TRLALGRALN TSMVKSFSVK NAGTIQIKVS  300
EACKPLPPQT PNLLQETRKI SSEASNLPQE APKGNVSPSN KLESIPENLP ALVKPPATGN  360
SPIKSVETQQ LPQEASNLLP VKGKVTPLNK PQSNSMIKAA AVAAGGRVLA ASAAALLTAT  420
QLKNAVHIRV GSSQLMSKAN KGQKQFNSHH SPPFARPPPL GNLLKISNGL MASSNLKRDS  480
RSLAGNAKKT NVKETSDDKG DGMKLDCVLN QDQGRSLDVG EEDRRVEKDG DVTEKQV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	6	10	KKRRK
2	180	203	KKRRVEVFKGNKTTGAEPASKKRK
3	181	204	KKRRVEVFKGNKTTGAEPASKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	3e-50	MYB_related family protein