PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_04.2614 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 137aa MW: 15092.1 Da PI: 5.3588 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.7 | 6.4e-18 | 19 | 66 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ie k tfskRr+g++KKA+ LSvLC+++vav+ +s+ + y y+ evm.model.AsparagusV1_04.2614 19 IEKKEAGGLTFSKRRQGLFKKASDLSVLCGVDVAVLALSEAENPYCYA 66 777777788*******************************99888776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence |
MDSSLRSGGG RRKIPIVKIE KKEAGGLTFS KRRQGLFKKA SDLSVLCGVD VAVLALSEAE 60 NPYCYASTPS LIRRILSTSP PAPSSSSSSD NVDELWWEEE PIERMSLDEL RVFRGQLARE 120 MQSIEAEEEG FSRSRP* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-16 | M-type_MADS family protein |