PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.2008
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family B3
Protein Properties Length: 423aa    MW: 47196.6 Da    PI: 10.7161
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.2008genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.72.5e-19262357395
                                    EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT CS
                             B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkeg 77 
                                    kvl++sdv+++gr+vlpkk ae h  +++++ ++ + +ed  ++r+W++k+++  ++ks++y+l+ ++ +Fv++ngL+eg
  evm.model.AsparagusV1_04.2008 262 KVLKQSDVGSLGRIVLPKKEAEIHlpELDTRDGISIPMEDiGTSRVWNMKYRFwpNNKSRMYLLE-NTGDFVRSNGLQEG 340
                                    99*******************999**9999**********7778*******99777777777777.************** PP

                                    -EEEEEE-SS.SEE..EEE CS
                             B3  78 DfvvFkldgr.sefelvvk 95 
                                    Df+v++   + ++ +++++
  evm.model.AsparagusV1_04.2008 341 DFIVIYS--DaKGSKYMIR 357
                                    ******4..4366666655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    
MAKIFLDWLK NNRDSISPED LRSIKLKKST IECAAARLGG GKQGRSQLLK LILTWVQNNH  60
LQSKKRXXXX PFNPSMMSAS TSSIVVNSQP FSPMTDFHSF SPPPPPPIHY PPFPGIGFPQ  120
YPTRYNSPYP PMYPHPSPSV GGSTASATKE ARKKRMARQR RVSVLNQQRN NQSHSQKSSI  180
SSAPPPPTAA TNSNKALKNW ALLSSARQKN LPTYSAAGSV HLSSKTSNMH QTQLQSRNLS  240
STSSDKRQGW KSEKNLRFLL RKVLKQSDVG SLGRIVLPKK EAEIHLPELD TRDGISIPME  300
DIGTSRVWNM KYRFWPNNKS RMYLLENTGD FVRSNGLQEG DFIVIYSDAK GSKYMIRGVK  360
VRQQSETKGA ACKLSAPKAH QRRSSKITRN NYDSVEDLSY CSDVDGDENG NAFPLSIMVD  420
DL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.15e-76B3 family protein