PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_04.1815 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | LBD | ||||||||
Protein Properties | Length: 123aa MW: 13269.8 Da PI: 8.2287 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 74.7 | 1.7e-23 | 10 | 91 | 1 | 86 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +C aCk+lrrkCa+dCv+apyf +e+ ++ h ++ + +++p++er +a+ +++yeA+ar+rdPvyG+v++i++ evm.model.AsparagusV1_04.1815 10 PCGACKFLRRKCASDCVFAPYFSNEHGSSSLRRH----STRCCGQQRHVPQHERCEAVVTIAYEAQARVRDPVYGCVSHIFA 87 7*********************999976666555....468899999*********************************** PP DUF260 83 lqqq 86 lqqq evm.model.AsparagusV1_04.1815 88 LQQQ 91 **98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence |
MSSNSSAGSP CGACKFLRRK CASDCVFAPY FSNEHGSSSL RRHSTRCCGQ QRHVPQHERC 60 EAVVTIAYEA QARVRDPVYG CVSHIFALQQ QGLVPRLIGS PSGHNDNEEA PLGGSLGTLH 120 HY* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 5e-38 | LBD family protein |