PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_03.773 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 171aa MW: 19098.9 Da PI: 10.078 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.4 | 9e-19 | 18 | 66 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ri ++ r+v fskRrng++ KA LS+LC+aevavi+ s+ g+ y + evm.model.AsparagusV1_03.773 18 ERIASEEARHVCFSKRRNGVFTKATDLSTLCGAEVAVIVNSPAGNPYSF 66 6899****************************************98877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence |
MARKNKATTG GRKKIAIERI ASEEARHVCF SKRRNGVFTK ATDLSTLCGA EVAVIVNSPA 60 GNPYSFGSPG VSEVVNRFLS RNPMRNAEDV YRMSRIRELN AQCMELSRRL DEANAKKAEM 120 ERRVKEVVER NVYCKLAEES EGVGVRELRA VEEAMGGVRM PHWLRVLSID * |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-24 | M-type_MADS family protein |