PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_03.770 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 217aa MW: 23640 Da PI: 10.8241 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.6 | 1.4e-17 | 18 | 61 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ri ++ r+v fskRrng++ KA LS+LC+aevavi+ s+ g+ evm.model.AsparagusV1_03.770 18 RIASEEARHVCFSKRRNGVFTKAADLSTLCGAEVAVIVNSPVGN 61 8999************************************9886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence |
MARKKKASHG RKKIAIQRIA SEEARHVCFS KRRNGVFTKA ADLSTLCGAE VAVIVNSPVG 60 NPYSLGSPGV NQVIDRYSTR SPMPLEPNNP YRASRIGELN AQCMELSRRL DLANARKAEM 120 GARVREAAER NPYAKLVDDI DQGLGSRELK VAEEALRGVR AQGERRLGEL MRGGGASSSS 180 VVPVNNAPMA VNPLRMMDGQ FQFGWPDPRF GFGRGF* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 7e-25 | M-type_MADS family protein |