PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.2280
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family B3
Protein Properties Length: 373aa    MW: 43126.2 Da    PI: 7.1041
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.2280genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.73.7e-17351161199
                                    HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                             B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                                    ++++ l +pkk++  + g+  ++ t+ l+d++ + W + l  +++ ++++l++GWkeFv+a ++ +gD ++Fk+dg+++f
  evm.model.AsparagusV1_03.2280  35 FSKH-LKIPKKCTYYFRGE--TPETVDLKDPDDNIWPIGL--KQTNEGILLQSGWKEFVEALHITDGDLLIFKYDGNQSF 109
                                    4555.9*****99555666..4559***************..999999****************************9999 PP

                                    ..EEEEE-S CS
                             B3  91 elvvkvfrk 99 
                                       v++f k
  evm.model.AsparagusV1_03.2280 110 --DVSIFGK 116
                                    ..8888865 PP
2B337.34.7e-12280366999
                                    HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                             B3   9 dvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                                    +v + + +++p kf ++h  +k++  t+ l+   + ++W+ ++    +s  ++ + +W++Fv +n L+ gD ++F+  ++
  evm.model.AsparagusV1_03.2280 280 SVYNACFMYVPIKFQRAHLPSKHC--TIYLQLpNQRKKWRSQF--YVYS--TMARFCWESFVVDNSLQLGDACLFQCLQN 353
                                    6778899***********655556..78888834669******..8888..568899*******************8887 PP

                                    .SEE..EEEEE-S CS
                             B3  88 .sefelvvkvfrk 99 
                                      +  ++v+++r+
  evm.model.AsparagusV1_03.2280 354 sGDVIMMVSICRA 366
                                    7999999999996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    
MEKDCGICNK YKEHYYLEHL NGERMEFYEL MHGNFSKHLK IPKKCTYYFR GETPETVDLK  60
DPDDNIWPIG LKQTNEGILL QSGWKEFVEA LHITDGDLLI FKYDGNQSFD VSIFGKDHCK  120
KEAFHLFMES DCEEEKSEDS VEVLNAKSHG KVFMRNSSTT RKISREKENP ASKYQRVKSN  180
CKRAIYGTSE LNGYAKKKNC NLSEPLCLPI QGLDVDAEGM GHNIKQEFVD AHNLEELISP  240
NFYISKRRSL TREEEELALL LVHSVKPRNP CFISILPYGS VYNACFMYVP IKFQRAHLPS  300
KHCTIYLQLP NQRKKWRSQF YVYSTMARFC WESFVVDNSL QLGDACLFQC LQNSGDVIMM  360
VSICRAAARE TD*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-18B3 family protein