PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_03.1584 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 145aa MW: 15976.2 Da PI: 5.0282 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54 | 2.2e-17 | 35 | 74 | 11 | 50 |
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 tfskRr+g++KKA+ LSvLC+++vav+ +s+ + y y+ evm.model.AsparagusV1_03.1584 35 GTFSKRRQGLFKKASDLSVLCGVDVAVLALSEAENPYCYA 74 69******************************99888776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence |
MMRDHMPWIP PCAPEEVGGR YPLIVKIKKK EAGGGTFSKR RQGLFKKASD LSVLCGVDVA 60 VLALSEAENP YCYASTPSLI CRILSTSPPA PSSSSSSDNV DELWWEEEPI ERMSLDELRV 120 FRGQLAREMQ SIEAEEGGFS RSRP* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 4e-12 | M-type_MADS family protein |