PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_01.627

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

HB-PHD

Protein Properties

Length: 700aa MW: 79980.2 Da PI: 7.8764

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_01.627	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	34.5	3.5e-11	481	523	11	53
HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +e L ++F kn ps++ re LA +lg++ ++V WF+N R+ evm.model.AsparagusV1_01.627 481 AVEKLRQVFSKNELPSRAIRENLAVELGISSEKVNKWFKNARY 523 5789**************************************7 PP
2	PHD	32.9	1.5e-11	217	270	1	51
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSSTBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpegewlCeeCkek 51 +C+ C+ + +++++lCd +C+ +fH+kCl+++le+ + + + wlC+ C++k evm.model.AsparagusV1_01.627 217 FCAKCKLreAFPDNDIILCDgTCNCAFHQKCLEPPLEKIPPAAQGWLCRFCECK 270 699999854455******56***********9999999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence
MGENVICYSS RNNLLKEVSS KLSPSPKNRI IHKISKKLCR YKLNSCTKRR GTKENTTIAK 60 MIENLRKNSA GGSARSQNSL KLARKKTYCL NDTKNCKNGS CDGAIGTTDR RKRQKRKKKR 120 NIVRDEASYL QRRARYLLIK MKLELNLIDA YSADGWKGQS KEKIKPEKEL QRAEKQILKC 180 KLGIRDTICQ LDLLSSEGRI ADSHMSPDGS VFHEHIFCAK CKLREAFPDN DIILCDGTCN 240 CAFHQKCLEP PLEKIPPAAQ GWLCRFCECK EEILETINAH IGTSFTVNSS WEDVFKEATT 300 DLITENTALN ADEEWPSDDS NDEDYDPELI ENSNSRTIEE SMCDDASSSS SLLCSSSDVT 360 DYERLDAESK SKKLSEAVDS IISIDPGECS DHEIISFRRQ RREVDYKKLH DEMFGKESNG 420 KEQQSDDEDW CPQRRKQRKR ELDADSLMAT SDNDVERLNM VEHKDTSGGR RKQLFRIPLD 480 AVEKLRQVFS KNELPSRAIR ENLAVELGIS SEKVNKWFKN ARYAALRIRK AEMTNEPQIT 540 DNSERSMSKA GKQTLDEEES MDDSYLLPLS SFLKMHRNSR KILHRKNSSI ATPLEKQQKD 600 TDNALPTDKI QKPRVPVEET FNSSRTEPQV DESIENEQLF SVEIERLFSL EERLQNLKTT 660 LLTCKGGDQV RNTAHLNELN VVYVPVAEVK EKSAKHINR*

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence

MGENVICYSS RNNLLKEVSS KLSPSPKNRI IHKISKKLCR YKLNSCTKRR GTKENTTIAK  60
MIENLRKNSA GGSARSQNSL KLARKKTYCL NDTKNCKNGS CDGAIGTTDR RKRQKRKKKR  120
NIVRDEASYL QRRARYLLIK MKLELNLIDA YSADGWKGQS KEKIKPEKEL QRAEKQILKC  180
KLGIRDTICQ LDLLSSEGRI ADSHMSPDGS VFHEHIFCAK CKLREAFPDN DIILCDGTCN  240
CAFHQKCLEP PLEKIPPAAQ GWLCRFCECK EEILETINAH IGTSFTVNSS WEDVFKEATT  300
DLITENTALN ADEEWPSDDS NDEDYDPELI ENSNSRTIEE SMCDDASSSS SLLCSSSDVT  360
DYERLDAESK SKKLSEAVDS IISIDPGECS DHEIISFRRQ RREVDYKKLH DEMFGKESNG  420
KEQQSDDEDW CPQRRKQRKR ELDADSLMAT SDNDVERLNM VEHKDTSGGR RKQLFRIPLD  480
AVEKLRQVFS KNELPSRAIR ENLAVELGIS SEKVNKWFKN ARYAALRIRK AEMTNEPQIT  540
DNSERSMSKA GKQTLDEEES MDDSYLLPLS SFLKMHRNSR KILHRKNSSI ATPLEKQQKD  600
TDNALPTDKI QKPRVPVEET FNSSRTEPQV DESIENEQLF SVEIERLFSL EERLQNLKTT  660
LLTCKGGDQV RNTAHLNELN VVYVPVAEVK EKSAKHINR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	120	RRKRQKRKKKR
2	112	120	KRQKRKKKR
3	115	142	KRKKKRNIVRDEASYLQRRARYLLIKMK
4	116	143	KRKKKRNIVRDEASYLQRRARYLLIKMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	1e-130	HB-PHD family protein