PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_01.54

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

SBP

Protein Properties

Length: 923aa MW: 102519 Da PI: 9.008

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_01.54	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.7	2.2e-40	128	205	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls ak+yhrrhkvCe+hska+vv++ gl+qrfCqqCsrfh l efDe+krsCr+rLa+hn+rrrk+++ evm.model.AsparagusV1_01.54 128 RCQAEGCKADLSGAKHYHRRHKVCEFHSKAAVVVAGGLQQRFCQQCSRFHVLAEFDESKRSCRKRLADHNRRRRKPHN 205 6**************************************************************************875 PP

Sequence ? help Back to Top
Protein Sequence Length: 923 aa Download sequence
MMNRLPSSSS SSSSVDPYSI FPFASSFDNW NAQLNYSTHT HQGFDGSHHH HPHPPPPPPH 60 HSLAPLPFYP PHLGSDYFIK REDHGNMGGR PIGLNLGHRT YFSSGDGLAI DRRLIVGRAH 120 HHHHQPPRCQ AEGCKADLSG AKHYHRRHKV CEFHSKAAVV VAGGLQQRFC QQCSRFHVLA 180 EFDESKRSCR KRLADHNRRR RKPHNKNSNN PSSATDSSSD KAKLTSRCTS STAATTNNTS 240 GTGLDQVNTG HVEQNKSILF RNGPALSLGG VAAGSQQISL FNNYQHHQYL ISPSPSSSNN 300 NNNNNNSVGF YHQSFIGSTS NDASQSHDLH QANLLHLGQS LFEEKGTNGL DKLVLRGPLS 360 SSAEIYLHGG HITSWKNNYR EELLFVSNKA IFKPPKAIRG GISICFPRFG THGFLEQHGF 420 AANRTWSIDT DPPSLPSDSS STTFVDLILK PSEGDLKFWP HSFELRLRIT LTLKGDLKVI 480 SRIRNTNANG KLFSFTLAYY SYFLVSDISE VRVEGLETMD YLDNLKGNER FTEQGDALTF 540 ESEVDRIYLS TQNRIAIIDH QKRRTIVLHK EGLPDAVVWN PWDKKAKAIT DFGRDEYKRM 600 ICIEGAAVEK PITLKPGEEW KGSQEFFSVR SSYNSGELDP QKSQICVVLT MLLLSLIVLH 660 SRLSLPSLFS SSNLQPYSPS SIPSTILTTT HFDGLPDDYR IDVLHLVRPL TMTTNQIPMT 720 ICKIPNPNLV PMHPPSFAIM FLEFTIDLFV AATLSRSRSI DLSPPPSLDA QCRSQYSLPT 780 HPALKGAAPP PHYPAWLFSS SSLLSSSSLR DPSPLASFFR RQDQPQSGEI GGGAPQKRPP 840 QPRDLLDVDQ AVEEPGDGSA REIDGGPRRP HPNPSPPPHP PPSLSASEEE LPAESATPSA 900 RRHPRRRRRR EFWGEGKGEG RV*

Sequence ? help Back to Top

Protein Sequence Length: 923 aa Download sequence

MMNRLPSSSS SSSSVDPYSI FPFASSFDNW NAQLNYSTHT HQGFDGSHHH HPHPPPPPPH  60
HSLAPLPFYP PHLGSDYFIK REDHGNMGGR PIGLNLGHRT YFSSGDGLAI DRRLIVGRAH  120
HHHHQPPRCQ AEGCKADLSG AKHYHRRHKV CEFHSKAAVV VAGGLQQRFC QQCSRFHVLA  180
EFDESKRSCR KRLADHNRRR RKPHNKNSNN PSSATDSSSD KAKLTSRCTS STAATTNNTS  240
GTGLDQVNTG HVEQNKSILF RNGPALSLGG VAAGSQQISL FNNYQHHQYL ISPSPSSSNN  300
NNNNNNSVGF YHQSFIGSTS NDASQSHDLH QANLLHLGQS LFEEKGTNGL DKLVLRGPLS  360
SSAEIYLHGG HITSWKNNYR EELLFVSNKA IFKPPKAIRG GISICFPRFG THGFLEQHGF  420
AANRTWSIDT DPPSLPSDSS STTFVDLILK PSEGDLKFWP HSFELRLRIT LTLKGDLKVI  480
SRIRNTNANG KLFSFTLAYY SYFLVSDISE VRVEGLETMD YLDNLKGNER FTEQGDALTF  540
ESEVDRIYLS TQNRIAIIDH QKRRTIVLHK EGLPDAVVWN PWDKKAKAIT DFGRDEYKRM  600
ICIEGAAVEK PITLKPGEEW KGSQEFFSVR SSYNSGELDP QKSQICVVLT MLLLSLIVLH  660
SRLSLPSLFS SSNLQPYSPS SIPSTILTTT HFDGLPDDYR IDVLHLVRPL TMTTNQIPMT  720
ICKIPNPNLV PMHPPSFAIM FLEFTIDLFV AATLSRSRSI DLSPPPSLDA QCRSQYSLPT  780
HPALKGAAPP PHYPAWLFSS SSLLSSSSLR DPSPLASFFR RQDQPQSGEI GGGAPQKRPP  840
QPRDLLDVDQ AVEEPGDGSA REIDGGPRRP HPNPSPPPHP PPSLSASEEE LPAESATPSA  900
RRHPRRRRRR EFWGEGKGEG RV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	203	KRSCRKRLADHNRRRRKP
2	901	910	RRHPRRRRRR
3	902	911	RRHPRRRRRR
4	905	910	RRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	3e-40	SBP family protein