PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_01.3559

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

SBP

Protein Properties

Length: 387aa MW: 42598.3 Da PI: 8.4951

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_01.3559	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	122.9	1.4e-38	113	190	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+Ce+dls ak+yhr+h+vCe hsk+ +v+v+g+ +rfCqqCsrfh+lsefD++krsCr+rL++hn+rrrk+++ evm.model.AsparagusV1_01.3559 113 RCQVEDCEVDLSGAKDYHRKHRVCENHSKCHKVVVAGQVRRFCQQCSRFHDLSEFDQKKRSCRKRLSDHNARRRKPAS 190 6**************************************************************************875 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MDWNIKSWDW ENQELLDGKG TESSTSSSKP GVKISGFGFD AVGDFSKSVN QNTESKSGLG 60 EPPIGLKLGK RTYFEDVCAG GNTKSSTSPI SLAPSAALVR KNRVTHQSAL SSRCQVEDCE 120 VDLSGAKDYH RKHRVCENHS KCHKVVVAGQ VRRFCQQCSR FHDLSEFDQK KRSCRKRLSD 180 HNARRRKPAS QVISFSSPRL ASPFYDGQQQ MGFLLNRYPF SIMKPVASST WEEPNGFSLT 240 HLKGAWNNKP TKAGDINGQL NFSDSGSSSI VPSLHHDFDR LLPFKGTSVL SQGAEACTHA 300 SNLDGMSDIR RAHSLLSSDS WGSANPDQLN TPHFGNMSHN GALDANSSSY WHTLAQQEQV 360 LAFESSFFDA GQMLSKPDGH FLEFKS*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MDWNIKSWDW ENQELLDGKG TESSTSSSKP GVKISGFGFD AVGDFSKSVN QNTESKSGLG  60
EPPIGLKLGK RTYFEDVCAG GNTKSSTSPI SLAPSAALVR KNRVTHQSAL SSRCQVEDCE  120
VDLSGAKDYH RKHRVCENHS KCHKVVVAGQ VRRFCQQCSR FHDLSEFDQK KRSCRKRLSD  180
HNARRRKPAS QVISFSSPRL ASPFYDGQQQ MGFLLNRYPF SIMKPVASST WEEPNGFSLT  240
HLKGAWNNKP TKAGDINGQL NFSDSGSSSI VPSLHHDFDR LLPFKGTSVL SQGAEACTHA  300
SNLDGMSDIR RAHSLLSSDS WGSANPDQLN TPHFGNMSHN GALDANSSSY WHTLAQQEQV  360
LAFESSFFDA GQMLSKPDGH FLEFKS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	170	187	KKRSCRKRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	2e-53	SBP family protein