PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_01.2932

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB_related

Protein Properties

Length: 447aa MW: 49199.9 Da PI: 4.8352

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_01.2932	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4e-16	321	363	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++E++l+v+++++lG++ W++Ia +++ gRt++++ks+w+++ evm.model.AsparagusV1_01.2932 321 DFSEDEEDLIVKLHALLGNR-WSLIAGRLP-GRTDNEIKSYWNSH 363 59****************.*****.*********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MLYWPTTNML YVEGYALDRF AEGSWALEPV HQNRVGLVLD AGMEEELRIR HLQVADATRA 60 SLGLPVVEYI VTDTPLEVEI WIDPTCGKST GRIKHPGSLL RAVHALVNKS NINAVAVVGR 120 FPDDDIDEIE DYRQGKGVDL LAGVEAVISH LVVKEFQIPC AHSPALSPLP LTSSLSPRSA 180 AEELGYTFLP CVLAGLSRAP QYVVEKPGSL EAGYVLASDV DSVLLPIDAC GGDGALAFAR 240 RGLKNKPLII AVEENGTVLD DTPEKLGIEA VKVSNYWEAV GVIAAHKAGV DPWALRREGI 300 NNIRGRRLRR RKSGEVGRTR DFSEDEEDLI VKLHALLGNR WSLIAGRLPG RTDNEIKSYW 360 NSHIKGKLES MGIDPNNHTV NQNAMRTCYM KNENEREVED DVVSDASSYV EEVPELNLDL 420 TVALPCEGLE KREHEEMNST TLVLFR*

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MLYWPTTNML YVEGYALDRF AEGSWALEPV HQNRVGLVLD AGMEEELRIR HLQVADATRA  60
SLGLPVVEYI VTDTPLEVEI WIDPTCGKST GRIKHPGSLL RAVHALVNKS NINAVAVVGR  120
FPDDDIDEIE DYRQGKGVDL LAGVEAVISH LVVKEFQIPC AHSPALSPLP LTSSLSPRSA  180
AEELGYTFLP CVLAGLSRAP QYVVEKPGSL EAGYVLASDV DSVLLPIDAC GGDGALAFAR  240
RGLKNKPLII AVEENGTVLD DTPEKLGIEA VKVSNYWEAV GVIAAHKAGV DPWALRREGI  300
NNIRGRRLRR RKSGEVGRTR DFSEDEEDLI VKLHALLGNR WSLIAGRLPG RTDNEIKSYW  360
NSHIKGKLES MGIDPNNHTV NQNAMRTCYM KNENEREVED DVVSDASSYV EEVPELNLDL  420
TVALPCEGLE KREHEEMNST TLVLFR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71030.1	5e-26	MYB_related family protein