PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_01.2873

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

HD-ZIP

Protein Properties

Length: 365aa MW: 41036.7 Da PI: 7.0575

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_01.2873	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.1	2.6e-17	235	288	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++ eq + Lee F++n++++ +++e LA+kl+L rqV vWFqNrRa+ k evm.model.AsparagusV1_01.2873 235 KKLQLSIEQCRLLEESFRQNQTLNPKQKEALATKLKLRIRQVEVWFQNRRARTK 288 55677889********************************************98 PP
2	HD-ZIP_I/II	110	1.6e-35	235	322	2	89
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 kk++ls eq +lLEesF+++++L+p++K++la++L+l+ rqv+vWFqnrRARtk+kq+E+++++Lkr++ +l+een+rL+ evm.model.AsparagusV1_01.2873 235 KKLQLSIEQCRLLEESFRQNQTLNPKQKEALATKLKLRIRQVEVWFQNRRARTKLKQTEMECHYLKRCFVSLREENRRLH 314 9***************************************************************************** PP HD-ZIP_I/II 82 keveeLre 89 ++veeLr+ evm.model.AsparagusV1_01.2873 315 RDVEELRS 322 ****93 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MAGANVVDPL VVGRVIGDVV DLFVPTVSMS ASYGSCXXXX EYRWPDERPL EESFCKNLSD 60 LEYDLREGRN SVEDDDWSTA STRSKGQEVV PYMGPRPPVG IHRYVLLLFS KKEQLSPRRR 120 YPHRSPGPTS THGLCVQLGL GLPVATSFQL SEGASPALVR TQSELMESSS LELTMAIPGL 180 SASSHSGRDV SGNKKMRDLD MNLPAWAPEE EELPTGSIED GEVVEGEESS NRRPKKLQLS 240 IEQCRLLEES FRQNQTLNPK QKEALATKLK LRIRQVEVWF QNRRARTKLK QTEMECHYLK 300 RCFVSLREEN RRLHRDVEEL RSLRVAPPTV ISPETCQPMP ASALTMCPRC QRINAGKPFE 360 GLEL*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MAGANVVDPL VVGRVIGDVV DLFVPTVSMS ASYGSCXXXX EYRWPDERPL EESFCKNLSD  60
LEYDLREGRN SVEDDDWSTA STRSKGQEVV PYMGPRPPVG IHRYVLLLFS KKEQLSPRRR  120
YPHRSPGPTS THGLCVQLGL GLPVATSFQL SEGASPALVR TQSELMESSS LELTMAIPGL  180
SASSHSGRDV SGNKKMRDLD MNLPAWAPEE EELPTGSIED GEVVEGEESS NRRPKKLQLS  240
IEQCRLLEES FRQNQTLNPK QKEALATKLK LRIRQVEVWF QNRRARTKLK QTEMECHYLK  300
RCFVSLREEN RRLHRDVEEL RSLRVAPPTV ISPETCQPMP ASALTMCPRC QRINAGKPFE  360
GLEL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	283	291	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	3e-51	HD-ZIP family protein