PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.1768
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family B3
Protein Properties Length: 362aa    MW: 41295.6 Da    PI: 7.8404
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.1768genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.47.6e-20571371399
                                    TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                             B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                                    s+++++p kf++++   ++ s  ++l+ +sg+ W+v     k+ gr++l+ GWk F++a+ L+++D+++Fk++g+s+f  
  evm.model.AsparagusV1_01.1768  57 SRQMIIPEKFMSRFR--ETLSEVISLKGPSGKIWQVGR--VKRAGRHFLQCGWKAFAEAHSLEDNDILIFKYEGDSCF-- 130
                                    567********9997..558899***************..9*************************************.. PP

                                    EEEEE-S CS
                             B3  93 vvkvfrk 99 
                                     v +f++
  evm.model.AsparagusV1_01.1768 131 SVLIFDS 137
                                    9999986 PP
2B3543.1e-17255351199
                                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                                    f++v+++ +v+++ +l +p +fa e+   ++e+++++l+ +   ++W+v+++++ +s+r++    W++Fv++n L+egD 
  evm.model.AsparagusV1_01.1768 255 FLTVMKSYNVGSQFQLLMPPDFAMEFL--PRENQEIILRIPGMkKEWKVNYCVTETSSRIIG--RWRNFVRDNSLDEGDA 330
                                    7889999999*************9995..3456699999977769******99999999664..6*************** PP

                                    EEEEE-SS.SEE..EEEEE-S CS
                             B3  80 vvFkldgr.sefelvvkvfrk 99 
                                    +vF+l ++ ++  ++v++fr+
  evm.model.AsparagusV1_01.1768 331 CVFELLKDrKRIAMKVHIFRA 351
                                    ****98777999******996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    
MGFTGIARAF GFLSAFGIGA NMKNNCEVCK QWHEHVYWEH KSSKMLRFCV TMVGDFSRQM  60
IIPEKFMSRF RETLSEVISL KGPSGKIWQV GRVKRAGRHF LQCGWKAFAE AHSLEDNDIL  120
IFKYEGDSCF SVLIFDSNNC ERESTYFAEN DHSVEQVDKE DSSQKTLEPS AEADDDDFDC  180
SFTSSPNCQR GDPSCSRRET KKRKDIPSPK QEQFGASLHG NCSENRNPAR RAATREERRA  240
AVEQANTFET NSPSFLTVMK SYNVGSQFQL LMPPDFAMEF LPRENQEIIL RIPGMKKEWK  300
VNYCVTETSS RIIGRWRNFV RDNSLDEGDA CVFELLKDRK RIAMKVHIFR AANRGASSLS  360
A*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-33B3 family protein