PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023916617.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 217aa MW: 24653.2 Da PI: 5.776 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.3 | 3e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n++ rqvtfskRr g++KKA+ELS+LCdae+ +++fs tgkl+e++s XP_023916617.1 9 KKIDNTTARQVTFSKRRRGLFKKAFELSILCDAEIGLMVFSATGKLFEFAS 59 68***********************************************86 PP | |||||||
2 | K-box | 47.4 | 8e-17 | 93 | 169 | 20 | 96 |
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 +a L keie+ +e+R++ Ge+L ++++eLq+Le++Le +l+++ ++K e +le+i +lq+k +l een++L++ XP_023916617.1 93 SYAMLSKEIEEKTHELRKIRGEELPGMDIEELQKLEKKLEVGLSRVIETKGEGFLEEITTLQQKGAQLMEENQRLKQ 169 678899*********************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence |
MTRRKIQIKK IDNTTARQVT FSKRRRGLFK KAFELSILCD AEIGLMVFSA TGKLFEFASS 60 SMQQVIERHN LHPDNLGKMD QLSLELQLEN GTSYAMLSKE IEEKTHELRK IRGEELPGMD 120 IEELQKLEKK LEVGLSRVIE TKGEGFLEEI TTLQQKGAQL MEENQRLKQI EDLLSTQTHV 180 LEQGQSSESI TNICSSSDPQ DNDSSNISLK LGLPFPK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-71 | MIKC_MADS family protein |