PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023916617.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MIKC_MADS
Protein Properties Length: 217aa    MW: 24653.2 Da    PI: 5.776
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023916617.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.33e-26959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n++ rqvtfskRr g++KKA+ELS+LCdae+ +++fs tgkl+e++s
  XP_023916617.1  9 KKIDNTTARQVTFSKRRRGLFKKAFELSILCDAEIGLMVFSATGKLFEFAS 59
                    68***********************************************86 PP

2K-box47.48e-17931692096
           K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                      +a L keie+  +e+R++ Ge+L  ++++eLq+Le++Le +l+++ ++K e +le+i +lq+k  +l een++L++
  XP_023916617.1  93 SYAMLSKEIEEKTHELRKIRGEELPGMDIEELQKLEKKLEVGLSRVIETKGEGFLEEITTLQQKGAQLMEENQRLKQ 169
                     678899*********************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MTRRKIQIKK IDNTTARQVT FSKRRRGLFK KAFELSILCD AEIGLMVFSA TGKLFEFASS  60
SMQQVIERHN LHPDNLGKMD QLSLELQLEN GTSYAMLSKE IEEKTHELRK IRGEELPGMD  120
IEELQKLEKK LEVGLSRVIE TKGEGFLEEI TTLQQKGAQL MEENQRLKQI EDLLSTQTHV  180
LEQGQSSESI TNICSSSDPQ DNDSSNISLK LGLPFPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-71MIKC_MADS family protein