PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023878588.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 29239.2 Da    PI: 9.8396
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023878588.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.72e-301059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  XP_023878588.1 10 RIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 59
                    8***********************************************96 PP

2K-box100.72e-338817414100
           K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + s++ e+akLk+++e Lqr+q+h+ GedL+sLslkeLq+LeqqL+++lk+iR++Kn++++e+i++lqkk k+lqe+n++L kk++e
  XP_023878588.1  88 NGSWNLEHAKLKARMEVLQRNQKHFRGEDLDSLSLKELQSLEQQLDSALKHIRTRKNQVMHESISDLQKKDKALQEQNNSLAKKVKE 174
                     5789********************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MGRGRVQLRR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYSTD  60
SCMERILERY ERYSYAERRL LANDLEPNGS WNLEHAKLKA RMEVLQRNQK HFRGEDLDSL  120
SLKELQSLEQ QLDSALKHIR TRKNQVMHES ISDLQKKDKA LQEQNNSLAK KVKEKEKEIA  180
QQEQLWEQQN HTLESSSVLP QPLQPPQPLQ PWNIGRSYQA SGYGREEETT PSQNQANTLL  240
PPWMLRHLNQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.17e-73MIKC_MADS family protein