PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023872516.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 218aa MW: 24864.4 Da PI: 6.3043 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.8 | 2.1e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n++ rqvtfskRr g++KKA+ELS+LCda++a+++fs tg+l+ey+s XP_023872516.1 9 KKIDNTTARQVTFSKRRRGLFKKAFELSTLCDADIALMVFSATGNLFEYAS 59 68***********************************************86 PP | |||||||
2 | K-box | 42.7 | 2.5e-15 | 91 | 170 | 18 | 97 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 ++ ++ L eie+ re+R+++Ge+L+ ++++eLq+Le+ Le +l+++ ++K e +le+i l++k +l en++L+++ XP_023872516.1 91 STSYTMLSMEIEEKTRELRKIKGEELNGMDIEELQKLEKVLEVGLSRVLETKGERFLEEITVLKRKGAQLMAENQRLKQM 170 566788889999999**************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence |
MTRKKIQIKK IDNTTARQVT FSKRRRGLFK KAFELSTLCD ADIALMVFSA TGNLFEYASS 60 SMQQVIERHN LHAENLGKMD QPSLELQLEN STSYTMLSME IEEKTRELRK IKGEELNGMD 120 IEELQKLEKV LEVGLSRVLE TKGERFLEEI TVLKRKGAQL MAENQRLKQM ENMFSTQTHV 180 LEQGQSSESI SNICNSSDPP QDNDSSDTSL KLGLPFPK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 3e-69 | MIKC_MADS family protein |