PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro06_G13142 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | C2H2 | ||||||||
Protein Properties | Length: 425aa MW: 47871.2 Da PI: 8.6741 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.2 | 3.7e-07 | 221 | 243 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H Ro06_G13142 221 HYCQVCGKGFKRDANLRMHMRAH 243 68*******************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence |
MNINQGATSN CFQSMYSMTD QDTISSFSLE PNSSSSGAVI TQDQNHSSSL LYSLSVLKEK 60 VHQAKSLVSM LITPDHHQSQ QQQPTESTTM GVVASMNNVI QEIIVTASSM MFTCQQMALV 120 APGNDTRTQP NFSISNDRSN IRDAAFYSTH DQTIDWLSTE NYNDCPTRDV ISRSHRQVEA 180 KELPPRVETN NGLKLQSLPQ KNSSYDIIEL EVADLLAKYT HYCQVCGKGF KRDANLRMHM 240 RAHGDEYKTS TALSNPLKNN NKNSVMNIHG SSNAECSMKL PRKYSCPQQG CRWNQKHAKF 300 QPLKSMICVK NHYKRSHCPK MYICKRCNRK QFSVLSDLRT HEKHCGDLRW QCSCGTTFSR 360 KDKLMGHVAL FVGHTPVIIS SDLPLRHGKA ESQATGLMQL VARPFLSPSF GFFDWSVPLL 420 SNEDV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 1e-102 | C2H2 family protein |