PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G13142
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 425aa    MW: 47871.2 Da    PI: 8.6741
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G13142genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.23.7e-07221243123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C+ Cgk F+r  nL+ H+r H
  Ro06_G13142 221 HYCQVCGKGFKRDANLRMHMRAH 243
                  68*******************99 PP

Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    
MNINQGATSN CFQSMYSMTD QDTISSFSLE PNSSSSGAVI TQDQNHSSSL LYSLSVLKEK  60
VHQAKSLVSM LITPDHHQSQ QQQPTESTTM GVVASMNNVI QEIIVTASSM MFTCQQMALV  120
APGNDTRTQP NFSISNDRSN IRDAAFYSTH DQTIDWLSTE NYNDCPTRDV ISRSHRQVEA  180
KELPPRVETN NGLKLQSLPQ KNSSYDIIEL EVADLLAKYT HYCQVCGKGF KRDANLRMHM  240
RAHGDEYKTS TALSNPLKNN NKNSVMNIHG SSNAECSMKL PRKYSCPQQG CRWNQKHAKF  300
QPLKSMICVK NHYKRSHCPK MYICKRCNRK QFSVLSDLRT HEKHCGDLRW QCSCGTTFSR  360
KDKLMGHVAL FVGHTPVIIS SDLPLRHGKA ESQATGLMQL VARPFLSPSF GFFDWSVPLL  420
SNEDV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-102C2H2 family protein