PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G03311

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 498aa MW: 55276.7 Da PI: 9.1746

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G03311	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00075	100	118	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C Cgk F ++ L H++ Ro05_G03311 100 CRECGKGFQSWKALFAHMK 118 9*****************7 PP
2	zf-C2H2	12.2	0.00056	331	353	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H Ro05_G03311 331 YECGTCNKVFRSYQALGGHRASH 353 99**********99999998887 PP
3	zf-C2H2	12.5	0.00045	411	433	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F++ L H r+H Ro05_G03311 411 HSCPICLKVFPTGQALGGHKRSH 433 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence
MEEDQEFKHF CKLCSKSFPC GRSLGGHMRS HLINSNSIDT DDQKLIKSRV TLSSLSNYTE 60 TAFETGPQAG YGLRENPKRT WRIADSSEDT SLCAADNKLC RECGKGFQSW KALFAHMKCH 120 SNSITNSFEN EQDSWTSDKV MDSQSENETT NTTRRRRTTS RRRRTRYMGA TTTTSSSNFS 180 IANNNASSSV TEIEQEQQQE VALCLMMLSR DVGHWGGLKF VADLDHSTSD NNSGFSDAPS 240 SLRMHRISEI KGKNSVSSAT LETFKLKKLK KKMSEEEVSV GGFSKNDKFN KNLVKKIELT 300 QAQLGSNKFN SSNKRKLQDA YDHSSPKRSR YECGTCNKVF RSYQALGGHR ASHKKIKGCF 360 ASKIESSENT TEFDTDLSPD HPIASGSKLS SLIDHQDVVK AESISTKSKG HSCPICLKVF 420 PTGQALGGHK RSHVIGGSAE SKNSQSTIVI PKPATPEVRD FLDLNLPAPV EEESSTSHAA 480 AQAFKPWWKS NLFALCTK

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence

MEEDQEFKHF CKLCSKSFPC GRSLGGHMRS HLINSNSIDT DDQKLIKSRV TLSSLSNYTE  60
TAFETGPQAG YGLRENPKRT WRIADSSEDT SLCAADNKLC RECGKGFQSW KALFAHMKCH  120
SNSITNSFEN EQDSWTSDKV MDSQSENETT NTTRRRRTTS RRRRTRYMGA TTTTSSSNFS  180
IANNNASSSV TEIEQEQQQE VALCLMMLSR DVGHWGGLKF VADLDHSTSD NNSGFSDAPS  240
SLRMHRISEI KGKNSVSSAT LETFKLKKLK KKMSEEEVSV GGFSKNDKFN KNLVKKIELT  300
QAQLGSNKFN SSNKRKLQDA YDHSSPKRSR YECGTCNKVF RSYQALGGHR ASHKKIKGCF  360
ASKIESSENT TEFDTDLSPD HPIASGSKLS SLIDHQDVVK AESISTKSKG HSCPICLKVF  420
PTGQALGGHK RSHVIGGSAE SKNSQSTIVI PKPATPEVRD FLDLNLPAPV EEESSTSHAA  480
AQAFKPWWKS NLFALCTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	4e-26	C2H2 family protein