PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro04_G15165 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | C2H2 | ||||||||
Protein Properties | Length: 562aa MW: 63337.6 Da PI: 7.6551 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0017 | 101 | 119 | 2 | 20 |
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 +C+ Cgk F++ L H+ Ro04_G15165 101 VCKECGKGFPSLKALCGHM 119 6*****************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 562 aa Download sequence |
MEEDQNQQKK FVCKFCNRRF QCGKSLGGHI RTHLNKKPTR EKEQEEEDDE FARATTRIAK 60 LSSLDSGPEG QSGYRLRENP KKTWRFADHK VPSFQFQQEK VCKECGKGFP SLKALCGHMA 120 CHSEKEKRLE EIEEFSETSE KQKLVMDSQS DTETSSAPTK QRRVSKRLRE NNFEVHGGCS 180 SGSGVEQEQQ EVAISLMMLS RDSGYKGGLN SFGESSDNNS VILEGKSSSI DMRISTKRSL 240 SYAPRVNDAM NLKRAREIKL KCEEVTVSDN SDSGYYRHEP KKVESDVSVD GFVRNGEFKK 300 YRAELGSEFG GYESYDVKSR KGFSIKSEMV KDLPKEEAYE QVGRGSLKYA LRKTTKNGFH 360 RQFTSGSSSV EVYKNVKQSS KYECLTCNKT FHSHRALGGH RASHTKSNGY SESMYESGEN 420 SIDTDESPVP TPESKLVEDK KPCKGKNPIN QDLGAKRNSG SKRSKGHECP FCFRVFKSGQ 480 ALGGHKRSHF VGGCEVKTVV LGQQQQQQQQ EEEEEEPELE VPEHEAEIPT LFDLNLPAPM 540 EEEATGNFGF GMSQNIILLI IN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 8e-92 | C2H2 family protein |