PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G15165
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 562aa    MW: 63337.6 Da    PI: 7.6551
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G15165genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017101119220
                  EETTTTEEESSHHHHHHHH CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                  +C+ Cgk F++   L  H+
  Ro04_G15165 101 VCKECGKGFPSLKALCGHM 119
                  6*****************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    
MEEDQNQQKK FVCKFCNRRF QCGKSLGGHI RTHLNKKPTR EKEQEEEDDE FARATTRIAK  60
LSSLDSGPEG QSGYRLRENP KKTWRFADHK VPSFQFQQEK VCKECGKGFP SLKALCGHMA  120
CHSEKEKRLE EIEEFSETSE KQKLVMDSQS DTETSSAPTK QRRVSKRLRE NNFEVHGGCS  180
SGSGVEQEQQ EVAISLMMLS RDSGYKGGLN SFGESSDNNS VILEGKSSSI DMRISTKRSL  240
SYAPRVNDAM NLKRAREIKL KCEEVTVSDN SDSGYYRHEP KKVESDVSVD GFVRNGEFKK  300
YRAELGSEFG GYESYDVKSR KGFSIKSEMV KDLPKEEAYE QVGRGSLKYA LRKTTKNGFH  360
RQFTSGSSSV EVYKNVKQSS KYECLTCNKT FHSHRALGGH RASHTKSNGY SESMYESGEN  420
SIDTDESPVP TPESKLVEDK KPCKGKNPIN QDLGAKRNSG SKRSKGHECP FCFRVFKSGQ  480
ALGGHKRSHF VGGCEVKTVV LGQQQQQQQQ EEEEEEPELE VPEHEAEIPT LFDLNLPAPM  540
EEEATGNFGF GMSQNIILLI IN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.18e-92C2H2 family protein