PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro02_G00512 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | C2H2 | ||||||||
Protein Properties | Length: 260aa MW: 27906.9 Da PI: 8.5986 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00024 | 96 | 118 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k F++ L H +H Ro02_G00512 96 YKCSVCDKAFPSYQALGGHKASH 118 9***********99999998887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence |
MALEALSSPT AAGQAFHYEE PKLHYSEPWT KRKRSKRPRS LDQTQVSEEE YLALCLIMLA 60 RGGRDAASHR SQSPIPTIPV VEQATSAPAK ENQLSYKCSV CDKAFPSYQA LGGHKASHRK 120 GSSATIGGEG PSTSSTTTTT SAATVSHNAS GRSHECSICH KSFPTGQALG GHKRCHYEGG 180 ATATRSAATT SAVTSSEGVG STTHTVSQSQ HRETFDLNLP AFPEPLSRNF FHSGDDEVES 240 PHPTKKPRLF MTPKVEISLN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 1e-53 | C2H2 family protein |