PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G01284
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 299aa    MW: 31293.5 Da    PI: 4.1418
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G01284genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.8e-06203224223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  +C+ C+k+++++  L  H+r+H
  Ro01_G01284 203 PCQVCNKRYTSWKALFGHMRSH 224
                  5********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MANTTPSSPT NTNVAETATL TDNNNVVAPP VPETADGDVV VVPAVTSETV VVSLLDDDAD  60
NDGGAVPMDT TEKRDETTAV TNTAEVVIPI PTNCSLPPVV VTAETFFAAL PGMMTGEEST  120
TPTEGGEGSS QAPPPQQGGG AEFTIVYCPT TGNGMYMTPP VPVQPRGEQE SNIPPSLVSA  180
TATTVPARSS APESSQRRSP PPPCQVCNKR YTSWKALFGH MRSHPDRTWR GVHPPPRFDG  240
HRQREIIDLT LVGDDEHEEE GTGPPPVDGV LPTVIDLNKP PPRDDGNDGA AGAAGINIH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.19e-12C2H2 family protein