PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro01_G01284 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | C2H2 | ||||||||
Protein Properties | Length: 299aa MW: 31293.5 Da PI: 4.1418 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19 | 3.8e-06 | 203 | 224 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+k+++++ L H+r+H Ro01_G01284 203 PCQVCNKRYTSWKALFGHMRSH 224 5********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence |
MANTTPSSPT NTNVAETATL TDNNNVVAPP VPETADGDVV VVPAVTSETV VVSLLDDDAD 60 NDGGAVPMDT TEKRDETTAV TNTAEVVIPI PTNCSLPPVV VTAETFFAAL PGMMTGEEST 120 TPTEGGEGSS QAPPPQQGGG AEFTIVYCPT TGNGMYMTPP VPVQPRGEQE SNIPPSLVSA 180 TATTVPARSS APESSQRRSP PPPCQVCNKR YTSWKALFGH MRSHPDRTWR GVHPPPRFDG 240 HRQREIIDLT LVGDDEHEEE GTGPPPVDGV LPTVIDLNKP PPRDDGNDGA AGAAGINIH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 9e-12 | C2H2 family protein |