PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62033728-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MYB
Protein Properties Length: 288aa    MW: 33213.1 Da    PI: 6.6144
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62033728-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.3e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l  +++++G  +W+ I++  g+ R++k+c++rw +yl
   AUR62033728-RA 14 KGAWSPEEDNKLRSYIQRYGHWNWREIPKFAGLARCGKSCRLRWINYL 61
                     79******************99************************97 PP
2Myb_DNA-binding506.8e-1672110646
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++E++l+++++kqlG++ W++Ia+ ++ gRt++++k++w++
   AUR62033728-RA  72 KDEEDLIIKLHKQLGNR-WSKIAASLP-GRTDNEIKNYWHT 110
                      79***************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MVKKPVIDEN GLKKGAWSPE EDNKLRSYIQ RYGHWNWREI PKFAGLARCG KSCRLRWINY  60
LRPNVKHGDF CKDEEDLIIK LHKQLGNRWS KIAASLPGRT DNEIKNYWHT QLKKRVCDQH  120
IWTTDKKRKR NFTRKSLTQK LQIIHNNNQN NNYDSNLDLD FTQTNPQILE SCPLSPQLSG  180
NNSQNLSSNS ETYVDTSCNT TTDHDCNDLA STAVKTLCLS SLDSMGSVLL DESFWTEPFA  240
LETSEQYYCN LDLSVLDEGM SFSPVTSYWE NMDFLYSFSS DVDAIIQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113130KKRVCDQHIWTTDKKRKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-54MYB family protein