PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62027278-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MYB
Protein Properties Length: 307aa    MW: 34273.1 Da    PI: 4.5748
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62027278-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.3e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l++ +   G  +W+++++  g++R++k+c++rw +yl
   AUR62027278-RA 14 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding51.13.2e-1671111547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +  E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
   AUR62027278-RA  71 SDAEEQLVIDLHARLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111
                      778***************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MGRQPCCDKL GVKKGPWTAE EDKKLINFIL TNGQCCWRAV PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL SDAEEQLVID LHARLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLIKMG  120
IDPVTHEPLN KDQSPNNQII PNQSSSSSNN NNNSDISTAE SLNQTQSSSL ETANSDPANS  180
MSVINSMSED ITNNNSPPTE NSSSVNNDQP NTSSLIEGIS IDNALMNYLW DDNDVTPLEL  240
PYSYNSDQTC LSSNNVANTI TLPTWEDNCS WLFDCQDFGI QDFGLDCFND IEIMNTMDVL  300
EMGNNQ*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.11e-92MYB family protein