PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc06124.1.g00010.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 314aa MW: 33547.9 Da PI: 10.8129

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc06124.1.g00010.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	36.5	1.3e-11	279	314	1	36
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevsk 36 rW+++e+laLi++r+em+ ++r++ lk+plWe+vs+ Zpz_sc06124.1.g00010.1.am.mk 279 RWPRDETLALIRIRSEMDATFRDATLKGPLWEDVSR 314 8*********************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MLNLAPHAGT YAFLHPAPQL PTREVRSPRG CDMAHRGRRR GAAVVPGSGS LGQPTGRGDA 60 SSPSPTPAEH RGVFACFFPP FSHLGPFLVV LFSPSVAPLS TASPPRRALR SLYQPFFSNF 120 ILSLQFPFPN PLSLSLRPHH PRSVCVRGRE RQRRETGLRG RLAPRCRARC GGEGELLQSS 180 WEEGELVVVP GAAVVAPMQQ HQGDGSPYGA QPPPDTGPFS QQVASSATPL SSRPPSSQQL 240 RPSYKELAGM SGTSGAGGGF RDDEMLGGGS GSGASGGNRW PRDETLALIR IRSEMDATFR 300 DATLKGPLWE DVSR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc06124.1.g00010.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL606587	1e-36	AL606587.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011L07, complete sequence.
GenBank	AP014960	1e-36	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	1e-36	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855197	1e-36	CR855197.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0115B09, complete sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15223	12	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	2e-15	GT-2-like 1