PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc05543.1.g00030.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 464aa MW: 50074.1 Da PI: 8.4247

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc05543.1.g00030.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.6	2.1e-08	205	225	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G C++Gd+C FaHg Zpz_sc05543.1.g00030.1.am.mk 205 ACPDFRK-GGCRRGDNCEFAHG 225 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	7.22E-5	199	229	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.3E-5	200	226	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.619	201	227	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-6	205	225	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.2E-6	205	227	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	12	235	258	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.258	235	259	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MGGCACVART KGSGRALTTA PYMNGRSAKS PPLPAHHASE PEDIRFSSPL SLTEQHISAR 60 RVAIAFPIRT APRRKPSPRD LTPSIPATTT TMMMGEGMSA PPWSQHHLPV SGVDVGDDEV 120 APYLLAALQQ YLPSNTDFSC NDDDDDEATV MAAAAYDGDE FRMYEFKVRR CTRARSHDWT 180 DCPFAHPGEK ACRRDPRKYH YSGTACPDFR KGGCRRGDNC EFAHGVFECW LHPTRYRTQP 240 CKDGTACRRR VCFFAHTPDQ LRVVPSQQSS PRGVAAASSP LAASYDGSPL RRQAFESYLG 300 KSVMSSSPTS TLVPPSRSSS SDSPPLSPDG AATYLRGSWP GVGSPVNDVL ASLRQLRLSK 360 ANSSPSGGWS GYPASAFAYG SPKAGGLYSL PTTPRATTTT MAAATGFMHN LEPLDVGFAV 420 DEEPVQRVES GRALRAKVFE RLSKEGILSD ASTGVGCWVS DRIN

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MGGCACVART KGSGRALTTA PYMNGRSAKS PPLPAHHASE PEDIRFSSPL SLTEQHISAR  60
RVAIAFPIRT APRRKPSPRD LTPSIPATTT TMMMGEGMSA PPWSQHHLPV SGVDVGDDEV  120
APYLLAALQQ YLPSNTDFSC NDDDDDEATV MAAAAYDGDE FRMYEFKVRR CTRARSHDWT  180
DCPFAHPGEK ACRRDPRKYH YSGTACPDFR KGGCRRGDNC EFAHGVFECW LHPTRYRTQP  240
CKDGTACRRR VCFFAHTPDQ LRVVPSQQSS PRGVAAASSP LAASYDGSPL RRQAFESYLG  300
KSVMSSSPTS TLVPPSRSSS SDSPPLSPDG AATYLRGSWP GVGSPVNDVL ASLRQLRLSK  360
ANSSPSGGWS GYPASAFAYG SPKAGGLYSL PTTPRATTTT MAAATGFMHN LEPLDVGFAV  420
DEEPVQRVES GRALRAKVFE RLSKEGILSD ASTGVGCWVS DRIN

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269\|PubMed:16778011}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc05543.1.g00030.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817903.1	0.0	zinc finger CCCH domain-containing protein 2-like
Swissprot	Q9FU27	1e-179	C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBL	A0A2T7DS97	0.0	A0A2T7DS97_9POAL; Uncharacterized protein
STRING	ORUFI01G06440.1	1e-178	(Oryza rufipogon)
STRING	OS01T0192000-01	1e-178	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1578	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	3e-78	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Mebel AM,Kislov VV,Hayashi M Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories. J Chem Phys, 2007. 126(20): p. 204310 [PMID:17552765] Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T Anti-angiogenic function of tocotrienol. Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6 [PMID:18296349]