PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc05207.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 255aa MW: 27679.1 Da PI: 10.4624 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.3 | 1.2e-07 | 46 | 98 | 6 | 53 |
HHHHHHHHHHHHHHHHHHHCTSCCC........TTS-STCHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkas.....kapskKlsKaeiLekAveYIks 53 + +Er+RR+++N +++L +l+ s +++s+ + + Le A +YI++ Zpz_sc05207.1.g00010.1.am.mk 46 KTVERNRRNQMNALYSRLDTLVRDGSapeaeRGGSPATTRPDRLETAAHYIRQ 98 679********************95559999999999**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-7 | 45 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.45E-6 | 45 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.6E-5 | 47 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MVYYYPTRKR TPTPVSWPEM AMQPPPPPPF GNPAAGGGGG FKPDRKTVER NRRNQMNALY 60 SRLDTLVRDG SAPEAERGGS PATTRPDRLE TAAHYIRQTA ERVERLRERK RELTSASSTQ 120 LGSGSSARAA EVEVQHLGSG LHAILVTGAP PSDGTSFHRA VRAVEEAGGE VQNAHFSVVG 180 ARAIYTIHTL VTAQQGGIER VVQRLRGALL QTLCARRMQS WKLESNALAD GRSTRTVLKA 240 STYATHLLSD ADGLD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc05207.1.g00010.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004954617.2 | 2e-78 | transcription factor bHLH162 | ||||
TrEMBL | A0A1E5VEJ3 | 1e-77 | A0A1E5VEJ3_9POAL; Uncharacterized protein | ||||
STRING | Si020234m | 6e-78 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11987 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 2e-12 | bHLH family protein |