PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc05067.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 247aa    MW: 27442 Da    PI: 9.3133
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc05067.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.2e-15150197148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT++Ed++lv  +   G g+W+++++  g+ R++k+c++rw +yl
  Zpz_sc05067.1.g00010.1.am.mk 150 KGPWTADEDQKLVSFILGNGHGCWRAVPKLAGLLRCRKSCRLRWTNYL 197
                                   79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-20141199IPR009057Homeodomain-like
PROSITE profilePS5129420.742145201IPR017930Myb domain
SMARTSM007175.0E-11149199IPR001005SANT/Myb domain
PfamPF002492.1E-13150197IPR001005SANT/Myb domain
SuperFamilySSF466892.21E-18151224IPR009057Homeodomain-like
CDDcd001675.79E-9152197No hitNo description
Gene3DG3DSA:1.10.10.602.8E-5200224IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSTTATASQA HRVGGDWACR EHQRKKAPFL GRRVPLLPYV SMLDDAGCFL HGKIAGGVLV  60
GWEKHGLWAT SQSLEPCVFA DLVIDDLHVV SCLTRPVPCS SPPLLPYKGS QFLITCVSEQ  120
RGVFSVLDQK LTSQVKMGRQ PCCDKVGLKK GPWTADEDQK LVSFILGNGH GCWRAVPKLA  180
GLLRCRKSCR LRWTNYLRPD LKRGLLSEAE EKIVVDLHAQ LGNRCHAHAT PRFILLTELF  240
SVRCSTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-13148224580B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc05067.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0926063e-95FP092606.1 Phyllostachys edulis cDNA clone: bphylf044c24, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.13e-51myb domain protein 20