PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04854.1.g00020.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 383aa    MW: 40322.1 Da    PI: 6.1833
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04854.1.g00020.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.39.1e-18264298135
                            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Zpz_sc04854.1.g00020.1.sm.mkhc 264 CLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRL 298
                                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.8E-701343IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.571258294IPR000679Zinc finger, GATA-type
SMARTSM004013.6E-18258308IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.2E-15258295IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.14E-15260321No hitNo description
CDDcd002021.55E-14263310No hitNo description
PfamPF003201.4E-15264298IPR000679Zinc finger, GATA-type
PROSITE patternPS003440264289IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEAAEATEYG HYGGAGRERK VAGCGGDLFA VDDLLVLPYD DEEECDGEAP VVDAAGGGGG  60
TVKVKEEGGF GNLSADSSTV TTALDSCSNS FSGLANGDFS GELCEPYDQL VELEWLSNYM  120
GEGEDTFATE DLQKLQLING LSAGGFSSSA AKVSPAPVAS STQLAGRMFL PEAPVPAKAR  180
TKRYRAAPGN WSSRHLVLPP TPASPPSPAS MAISPAESGI SVQAFQAAKK PSKKKDAPQA  240
QPPSSAPAQS SGSGSAASAE GRRCLHCETD KTPQWRTGPM GPKTLCNACG VRYKSGRLVP  300
EYRPAASPTF VMSKHSNSHR KVLELRRQKE IQHGHQPHVM AGNGAGGLMH MQNPLLFDGQ  360
PIMAGDDFLV PQHLGPDYRR QLI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04854.1.g00020.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0609504e-86BT060950.1 Zea mays full-length cDNA clone ZM_BFb0075O21 mRNA, complete cds.
GenBankEU9631214e-86EU963121.1 Zea mays clone 257954 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969927.11e-158GATA transcription factor 12
TrEMBLK3XIL31e-157K3XIL3_SETIT; GATA transcription factor
STRINGSi001735m1e-158(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.16e-49GATA transcription factor 12