PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc04707.1.g00040.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | SBP | ||||||||
Protein Properties | Length: 256aa MW: 28070 Da PI: 7.993 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 51.6 | 2.6e-16 | 34 | 68 | 43 | 77 |
-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 43 CqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 C +rfh l+efDe+krsCr+rLa+hn+rrrk++ Zpz_sc04707.1.g00040.1.sm.mk 34 CIDRGRFHVLTEFDEAKRSCRKRLAEHNRRRRKPA 68 66779****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 12.956 | 1 | 67 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.0E-9 | 34 | 66 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.22E-12 | 34 | 71 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 1.9E-5 | 34 | 54 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MADELLALAD SRSWLPRSGA RTGRISLPAL PYPCIDRGRF HVLTEFDEAK RSCRKRLAEH 60 NRRRRKPATT AVSSKDGGEP TAKKPNTGAI TSSPHEHAQT DRVVEHQQRD QLLGSGQAGE 120 ADTDPRRGPD LMSTRKPTVS SNTSSVISCL DQGKQARPTL TLGAAQVDKD HQQQQQQLST 180 MLQVQPSADH QEQHFLTSLQ VHHHHQNSSS NNNNILSCSS VCSSALPPAA NGELSDQTNN 240 SNNGNGNMHL FEMDFM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 49 | 66 | KRSCRKRLAEHNRRRRKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc04707.1.g00040.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965676.1 | 7e-65 | squamosa promoter-binding-like protein 10 | ||||
TrEMBL | K3XXA1 | 2e-63 | K3XXA1_SETIT; Uncharacterized protein | ||||
STRING | Si006559m | 3e-64 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 4e-13 | squamosa promoter binding protein-like 8 |