PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04624.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 259aa    MW: 28616.9 Da    PI: 10.0481
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04624.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.62.5e-53121371128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lppGfrFhPtdeel+++yL++kv+++++ +  ++ e+d++k+ePw+Lp+ +k +ekewyfF+ +d+ky+tg r+nrat +g
  Zpz_sc04624.1.g00040.1.am.mk  12 LPPGFRFHPTDEELITHYLARKVADSRFAA-LAVGEADLNKSEPWELPSLAKMGEKEWYFFCLKDRKYPTGLRTNRATVAG 91 
                                   79*************************999.67***************8888899************************** PP

                           NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   yWkatgkdk++++ +++lvg kktLvfy+grapkgek+ Wvmheyrl
  Zpz_sc04624.1.g00040.1.am.mk  92 YWKATGKDKDIFR-GKALVGSKKTLVFYTGRAPKGEKSGWVMHEYRL 137
                                   *************.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-626162IPR003441NAC domain
PROSITE profilePS5100557.69412162IPR003441NAC domain
PfamPF023659.3E-2913137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MKQDLHQQPM ELPPGFRFHP TDEELITHYL ARKVADSRFA ALAVGEADLN KSEPWELPSL  60
AKMGEKEWYF FCLKDRKYPT GLRTNRATVA GYWKATGKDK DIFRGKALVG SKKTLVFYTG  120
RAPKGEKSGW VMHEYRLHGK LINGVPKVGS KNEWVLCRVY KKSLAGLVPP PAAANKGTSE  180
MARTDDMVLA HLPRQMYMSG GATVNPAATH VTCFSDALKG QFFNHAVPQA TATANNGTDH  240
LGLASXXXSG ASDERRSHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-541016215165NO APICAL MERISTEM PROTEIN
1ut4_B1e-541016215165NO APICAL MERISTEM PROTEIN
1ut7_A1e-541016215165NO APICAL MERISTEM PROTEIN
1ut7_B1e-541016215165NO APICAL MERISTEM PROTEIN
3swm_A1e-541016318169NAC domain-containing protein 19
3swm_B1e-541016318169NAC domain-containing protein 19
3swm_C1e-541016318169NAC domain-containing protein 19
3swm_D1e-541016318169NAC domain-containing protein 19
3swp_A1e-541016318169NAC domain-containing protein 19
3swp_B1e-541016318169NAC domain-containing protein 19
3swp_C1e-541016318169NAC domain-containing protein 19
3swp_D1e-541016318169NAC domain-containing protein 19
4dul_A1e-541016215165NAC domain-containing protein 19
4dul_B1e-541016215165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04624.1.g00040.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0607701e-157BT060770.2 Zea mays full-length cDNA clone ZM_BFb0046M18 mRNA, complete cds.
GenBankBT0635431e-157BT063543.1 Zea mays full-length cDNA clone ZM_BFc0075B16 mRNA, complete cds.
GenBankBT0844931e-157BT084493.2 Zea mays full-length cDNA clone ZM_BFb0122M24 mRNA, complete cds.
GenBankJX4285301e-157JX428530.1 Zea mays subsp. mays clone pUT3130 NAC32 NAC type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826317.11e-128NAC domain-containing protein 92-like
RefseqXP_025826319.11e-128NAC domain-containing protein 92-like
RefseqXP_025826320.11e-128NAC domain-containing protein 92-like
RefseqXP_025826321.11e-128NAC domain-containing protein 92-like
SwissprotQ9FLJ22e-87NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A3G1VCF21e-178A0A3G1VCF2_9POAL; NAC domain transcription factor
STRINGPavir.Gb01850.1.p1e-124(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27303787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.19e-90NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]