PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04604.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 345aa    MW: 36028 Da    PI: 9.9802
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04604.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-05150172123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++C + F+++  L  H++ H
  Zpz_sc04604.1.g00040.1.am.mk 150 FECHYCRRNFPTSQALGGHQNAH 172
                                   89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.86E-6147178No hitNo description
PROSITE profilePS5015711.323150177IPR007087Zinc finger, C2H2
PROSITE patternPS000280152172IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MKQLVPNQIV VPTPQLRCDA SGRDPIQSRM SERDAPDGKT SASAGAAASI DSFSQLPFIH  60
PGLPPPPPPR PPPSAGSTPG IRLFGIDVPP DASATAKTAS PPPPPPTGVK VTEAANVVEE  120
SAETTNTDAA TITTAGAGAS GDGAGGARKF ECHYCRRNFP TSQALGGHQN AHKRERQHAK  180
RAQFQTAMAM HHRHHHGQYD PLVPDAAHLH ATYRHHHRFS SAPSPPPHYP SWAGAGRYSY  240
YNGPGSISQP INGSPVAPSG SWRGPLGGVG VGAAFAVRSQ ERPAPPPSLP VPGVGGEEPR  300
LGGMARPPGS RSFWRSTSSS SSSSSPHQLP APPEHKDNVS LNLSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04604.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0584572e-60AK058457.1 Oryza sativa Japonica Group cDNA clone:001-015-H09, full insert sequence.
GenBankAP0054052e-60AP005405.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:B1111C03.
GenBankAP0058712e-60AP005871.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:B1116H04.
GenBankAP0149642e-60AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126162e-60CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142755.11e-78Zinc finger protein
TrEMBLA0A0A9IGN16e-78A0A0A9IGN1_ARUDO; Uncharacterized protein
STRINGGRMZM2G151639_P014e-78(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8341720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41940.16e-17zinc finger protein 8