PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04568.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 426aa    MW: 44911.2 Da    PI: 8.2507
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04568.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.89.6e-33235292259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers  dp vv++tYeg+H+h+
  Zpz_sc04568.1.g00020.1.am.mk 235 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQRCPVKKRVERSYLDPAVVITTYEGKHTHP 292
                                   8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-34219294IPR003657WRKY domain
SuperFamilySSF1182905.36E-29226294IPR003657WRKY domain
PROSITE profilePS5081132.294229294IPR003657WRKY domain
SMARTSM007746.4E-39234293IPR003657WRKY domain
PfamPF031065.9E-26235292IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MSSPGEYLYY HDELASLFAQ PTSDTMQQRQ EASCFPDFLL AGPPTATRFQ QLQSPTSDVM  60
QHLLAGMPMG DYDPLFGALD LPVAAADVVV KRELVVDTTS GGGSRTPSTA PVTPNATSSM  120
SSSSSEAAGG GRGGFGAGGF GAAKEDSPAG RCKKEEGDGE DSNVSGKGDQ EDGDKCKRGH  180
PTTAFERDSP GVPAGGHRSI TSAGSAAKAK GKGGEKRQRQ PQFAFMTKSE VDHLEDGYRW  240
RKYGQKAVKN SPYPRSYYRC TTQRCPVKKR VERSYLDPAV VITTYEGKHT HPIPAALRGS  300
THLLAAQAAH GLHHHQFGSL VPMPHTMGAA APFGRTGGGG GIDMLGLLQP RGASHRAMLP  360
TTMTHASSHG LAAGPVSSSV AMSAATTTTS SAPSPSSLQM QHMMAQDFGF LQDMMMPSFV  420
HSNVQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-28225295878Probable WRKY transcription factor 4
2lex_A6e-28225295878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04568.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1008331e-122FP100833.1 Phyllostachys edulis cDNA clone: bphyem102p01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169830.11e-105uncharacterized protein LOC100383722
TrEMBLC0PIJ71e-103C0PIJ7_MAIZE; Putative WRKY transcription factor 71
STRINGGRMZM2G151763_P011e-104(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.13e-46WRKY DNA-binding protein 28