PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc04272.1.g00010.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 256aa MW: 27863.6 Da PI: 10.5579 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 131 | 8.7e-41 | 17 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 lppGfrFhPtdeelvv+yL++k+ +++l++ vi+ v d+ +++PwdLp a++ e yfFs r+ +++ g rk+ra Zpz_sc04272.1.g00010.1.am.mkhc 17 LPPGFRFHPTDEELVVQYLRRKALSRPLPA-AVIPVVhDVARLDPWDLP---GARDGEAYFFSLRRARATDGGRKRRA- 90 79****************************.8899998***********...447789*******************7. PP NAM 79 ksgyWkatgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 sgyWkatgk k+v+ + k+ lvg+k+tL+f++g +++ ++t+Wvmheyrl Zpz_sc04272.1.g00010.1.am.mkhc 91 CSGYWKATGKAKPVFLQgsgcggKRYLVGVKTTLAFHRGASSS-SRTSWVMHEYRL 145 67**************97777655556**********987776.8*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.2E-45 | 16 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.397 | 17 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.7E-25 | 18 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MEWPVAAARD GEAPRQLPPG FRFHPTDEEL VVQYLRRKAL SRPLPAAVIP VVHDVARLDP 60 WDLPGARDGE AYFFSLRRAR ATDGGRKRRA CSGYWKATGK AKPVFLQGSG CGGKRYLVGV 120 KTTLAFHRGA SSSSRTSWVM HEYRLAVPGR VAEQRKHAGQ GCAAHPEPGE WVVCRVFLKN 180 GPRRRPAGET PGNLAYAAPL RHQSTGRLPL LLSSSSLPQA SSSSCVTGVT ELSEQDEVDS 240 GNSVRDAPSA AFRREA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-32 | 9 | 181 | 7 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc04272.1.g00010.1.am.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957303.1 | 1e-101 | NAC domain-containing protein 41 | ||||
Swissprot | O22798 | 2e-46 | NAC41_ARATH; NAC domain-containing protein 41 | ||||
TrEMBL | A0A0A9GST6 | 1e-101 | A0A0A9GST6_ARUDO; Uncharacterized protein | ||||
STRING | Si030942m | 1e-100 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12805 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 1e-48 | NAC domain containing protein 41 |
Publications ? help Back to Top | |||
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