PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04248.1.g00050.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 499aa    MW: 53285.5 Da    PI: 9.0819
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04248.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA498.5e-16176207132
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                                   C++Cg  +Tp+WR+gp g +tLCnaCG++ r 
  Zpz_sc04248.1.g00050.1.am.mk 176 CVQCGKEETPQWRSGPMGRSTLCNACGVRLRA 207
                                   ****************************9986 PP
2GATA50.23.4e-16307341135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C +Cgtt+Tp+WR+gp g  tLCnaCG+++r  +l
  Zpz_sc04248.1.g00050.1.am.mk 307 CLHCGTTSTPQWREGPMGRHTLCNACGVRHRQGRL 341
                                   99*****************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.8E-13170221IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.822170224IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.71E-12174226No hitNo description
Gene3DG3DSA:3.30.50.101.2E-13174214IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.23E-11175225No hitNo description
PfamPF003202.8E-13176207IPR000679Zinc finger, GATA-type
PROSITE patternPS003440176201IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.14E-14300358No hitNo description
SMARTSM004017.2E-17301355IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.85301337IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.5E-15305339IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.26E-14306353No hitNo description
PROSITE patternPS003440307332IPR000679Zinc finger, GATA-type
PfamPF003206.8E-14307341IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
LTPGRVLSAR SPVAAAAAAA FFPSQLIRPP SMATAEGGDG RELAQPPGLG VPGPRTRRST  60
ATGDMAVAVA PAPAGCGEEE ERQMEGPQQL YVLGLAVALP LAVAVARLDA GVPRKARTIR  120
PSAEPSDWWT FRMPVPLVKE GKNSPADGKR PVPPEAPRLD AAEQIVEKPA KRAKRCVQCG  180
KEETPQWRSG PMGRSTLCNA CGVRLRAAGA LRETEQRPPP ATPRKVAHPP PPPPPAESPA  240
SDSSPDNPIC ERRAPIGDIY LVRKQPKSER WSPRKEAAPA PSPAVYLVKK KKPSKKPRKP  300
RNTGQRCLHC GTTSTPQWRE GPMGRHTLCN ACGVRHRQGR LLPEYRPAAS PTFVPSEHAS  360
RHSEVLQLHR QRRTNTQPGL TGDSGDAPES DEDDKNNVVL LRRQPPEKDH CSPTPLHRTL  420
PQPVDDDPRA RGNNGLAVTP VAGCGGGDVV TDVPSSLDSQ LLDVPSAPLI VDGDESLLLD  480
VPSAPLIVDG DESLVASEP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04248.1.g00050.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9713655e-58EU971365.1 Zea mays clone 363036 basic proline-rich protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977277.11e-114ras-associated and pleckstrin homology domains-containing protein 1 isoform X1
TrEMBLA0A0A9D6L51e-152A0A0A9D6L5_ARUDO; Uncharacterized protein
STRINGPavir.J37525.1.p1e-115(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.18e-28GATA transcription factor 9