PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03840.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 928aa    MW: 100945 Da    PI: 6.8291
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03840.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-171461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g W++eEde+l + ++++G g+W+t+++  g+ R++k+c++rw +yl
  Zpz_sc03840.1.g00030.1.am.mk 14 KGLWSPEEDEKLMNHITKHGHGCWSTVPKLAGLQRCGKSCRLRWINYL 61
                                  678*******************************************97 PP
2Myb_DNA-binding45.71.5e-1467109145
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                   rg++++eE++l+v++++ lG++ W+ Ia  ++ gRt++++k+ w+
  Zpz_sc03840.1.g00030.1.am.mk  67 RGAFSQEEEDLIVELHAVLGNR-WSQIATQLP-GRTDNEIKNLWN 109
                                   89********************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-27664IPR009057Homeodomain-like
PROSITE profilePS5129418.396961IPR017930Myb domain
SuperFamilySSF466897.86E-2912108IPR009057Homeodomain-like
SMARTSM007176.5E-121363IPR001005SANT/Myb domain
PfamPF002491.5E-141461IPR001005SANT/Myb domain
CDDcd001671.64E-101761No hitNo description
PROSITE profilePS5129424.95362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-2465116IPR009057Homeodomain-like
SMARTSM007179.8E-1366114IPR001005SANT/Myb domain
PfamPF002496.0E-1367109IPR001005SANT/Myb domain
CDDcd001675.73E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 928 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLMNHIT KHGHGCWSTV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SQEEEDLIVE LHAVLGNRWS QIATQLPGRT DNEIKNLWNS SIKKKLCQKG  120
IDPNTHKPLA EVDRSKAAPT ISTERTSESS DVDPSSGGAI GNLNHLLSET AQSPELLPVL  180
GKQRKEFTSL AHLRVPPKEL FLDQLVPGHD NIASGHLTGP IPNFPFQQLS CYGNEFGSSH  240
GGNTNSLWYN QNEPSGSTIS TVMPPVSPST LSTSTGLNRS PDNQQSGGTA IQSTQFHWDT  300
TDPSSTSSRG SSGSNGLGFE LQGMSSLLEN SVFPWSELAP DKSSQAHLEE ELKWPDLLHG  360
TFTDTPVTMQ NFSQSLYEDV VKAESQFNME GLCAPWSQNL QPPQHLQVVR AHLESASPNG  420
WRRSLGTGRP GRWSTRRCEG ECGSCRRKVW LAVGARRGGV AVWPVRVPVA FAPESGLPLG  480
LGGLLRRPQP IEWGATRFLS GWFDSMSAAG WSPATILCVA TAVAIAVGRG QSGATCLGGR  540
GPAAGLRQGP LNVCRNRVCH RAPRQQRQLA LPIRMHSQHE PVATGVGDGR PEIWRVRVAF  600
GNIANESSLP CFAQLQLSSP VGMMEAPHAH PPPTTVRDII GHDYDDDDDD DFIAEEAEEE  660
EDEDEWADVT RRVSRLSMEG SDGGDADDEN EAGDVDVEDD DDEFRSDVVN SRLPAVPPSA  720
LSLPGTPGRA AXXXXPPGGA RRRRERVMRE VWLERAWRVR KQRRELSQGH QVVIGDETPV  780
RSGVAMDLEE ARACRDLGLD LPGDWTVEIP CYALSGVDTA SSGGNSPASG SWRISSPDTS  840
NRASVWHHAT ASVALHRTAS ARVASKPPPA SNSTAGFCPG LPGRALGNPS ACSPRRLLPF  900
RDDPKDVKAR LKVWAQAVAL ASASRLCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28121165108B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03840.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23103794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.12e-85myb domain protein 61