PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03820.1.g00020.1.es.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 120aa    MW: 13563.7 Da    PI: 10.6538
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03820.1.g00020.1.es.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.37.1e-05841111944
                                     HHH..SSS--HHHHHHHHHHCTS-HHHH CS
                        Homeobox  19 Fek..nrypsaeereeLAkklgLterqV 44 
                                     Fe   ++yp+ ++++ LAk++gLt +q 
  Zpz_sc03820.1.g00020.1.es.mkhc  84 FEHflHPYPTDSDKQMLAKQTGLTRNQA 111
                                     664459******************9985 PP
2BELL21.65.4e-081215272
                            BELL 52 lAlkaiSrhFrcLkdaiaeqi 72
                                    +Al+++S+hF+cLk  i +q+
  Zpz_sc03820.1.g00020.1.es.mkhc  1 MALRTMSKHFKCLKGVILKQL 21
                                    7*****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-954113IPR009057Homeodomain-like
CDDcd000861.66E-665110No hitNo description
Gene3DG3DSA:1.10.10.601.2E-1668114IPR009057Homeodomain-like
PfamPF059202.2E-1082113IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MALRTMSKHF KCLKGVILKQ LRSTSKVANE GIGKEDMENC SLMGGGSGIM RGSSADVFNQ  60
PHNIWRPQRG LPERAVSVLR AWLFEHFLHP YPTDSDKQML AKQTGLTRNQ ARNFAPNLYF
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03820.1.g00020.1.es.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961888.19e-63BEL1-like homeodomain protein 9
SwissprotQ9SJ562e-31BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A0A9CHG61e-61A0A0A9CHG6_ARUDO; Uncharacterized protein
TrEMBLK3Z5082e-61K3Z508_SETIT; Uncharacterized protein
STRINGSi021626m3e-62(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2069537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-32BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]