PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc03784.1.g00020.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | DBB | ||||||||
Protein Properties | Length: 268aa MW: 28362.6 Da PI: 6.1619 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.6 | 1.9e-06 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ + + ++ fC ++ lC+ C H+ H+ Zpz_sc03784.1.g00020.1.sm.mkhc 4 QCDVCAAEAASVFCCADEAALCDACDRRVHSAnkvagkHR 43 7**************************9996566666666 PP | |||||||
2 | zf-B_box | 29.7 | 1.3e-09 | 63 | 105 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +++ C+ ++ek+ lfC++++ lC+dC ++ H Ht Zpz_sc03784.1.g00020.1.sm.mkhc 63 SPPLCDICQEKRGLLFCKEDRAILCRDCDVSVHTAskltmrHT 105 5789*****************************5566677776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.883 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.3E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.96E-6 | 3 | 45 | No hit | No description |
Pfam | PF00643 | 2.3E-5 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.1E-15 | 62 | 109 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.168 | 62 | 109 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.0E-7 | 64 | 105 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.67E-9 | 65 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MKVQCDVCAA EAASVFCCAD EAALCDACDR RVHSANKVAG KHRRFSLLSP TPSSSSGSAD 60 QQSPPLCDIC QEKRGLLFCK EDRAILCRDC DVSVHTASKL TMRHTRFLLT GVRLSTEPAA 120 SPAPPSEDED TRGSFCCSAG DAAPPAPATS HGSDSSSISE YLTKTLPGWH VEDFLVDEAA 180 AAAAASATTV GVYAGASYHQ GGLAGISGPQ HGYSAWMAQE QQLFYEGAVA GDARSHRERW 240 VPQMHEGMAD LAGTKRPRTT SAASYSCW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc03784.1.g00020.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100871 | 1e-171 | FP100871.1 Phyllostachys edulis cDNA clone: bphyem121a23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953281.1 | 1e-114 | B-box zinc finger protein 20 | ||||
Swissprot | Q9LQZ7 | 3e-52 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A3L6QKL3 | 1e-113 | A0A3L6QKL3_PANMI; B-box zinc finger protein 20-like | ||||
STRING | Si018081m | 1e-114 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2392 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 3e-37 | salt tolerance homolog2 |