PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03704.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 356aa    MW: 38364.3 Da    PI: 9.0825
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03704.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-174087148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g WT+eEd++lv ++k +G g+W++ ++  g+ R++k+c++rw +yl
  Zpz_sc03704.1.g00020.1.am.mk 40 KGTWTKEEDQRLVAYIKAHGEGCWRSLPKAAGLQRCGKSCRLRWINYL 87
                                  799*******************************************97 PP
2Myb_DNA-binding55.21.6e-1793137147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg++T eEd+l++++++ lG++ W+ Ia +++ gRt++++k++w+++
  Zpz_sc03704.1.g00020.1.am.mk  93 RGNFTDEEDDLIIKLHQVLGNK-WSMIAGRLP-GRTDNEIKNYWNTH 137
                                   89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.275925IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.1E-243190IPR009057Homeodomain-like
PROSITE profilePS5129417.3763587IPR017930Myb domain
SMARTSM007173.6E-133989IPR001005SANT/Myb domain
SuperFamilySSF466894.67E-3039134IPR009057Homeodomain-like
PfamPF002496.7E-154087IPR001005SANT/Myb domain
CDDcd001673.52E-114287No hitNo description
PROSITE profilePS5129427.77588142IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.3E-2891142IPR009057Homeodomain-like
SMARTSM007172.0E-1692140IPR001005SANT/Myb domain
PfamPF002494.4E-1593137IPR001005SANT/Myb domain
CDDcd001671.96E-1295138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGTWTKE EDQRLTMGRS PCCEKAHTNK GTWTKEEDQR LVAYIKAHGE  60
GCWRSLPKAA GLQRCGKSCR LRWINYLRPD LKRGNFTDEE DDLIIKLHQV LGNKWSMIAG  120
RLPGRTDNEI KNYWNTHIKR KLLARGIDPK THRPLSEAAT AAASSSTHLQ DHPARPSSSP  180
ETSCCAGQSG DEGSASGSLP ETSTQRQLAS CIIDLNLSIG PPQHQPSSSP PPPPTRPEAQ  240
AAGSSTTATA GTSSSSNSEK ERICLPRNIQ PSRAIFSPSC LMPASFSHTR EAQSLPSSSC  300
RDLPAATPPS PAALRPATVP LAAAPPSVLL PCRSSPRALT RTAPCALTHD CTSLRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30401427108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03704.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM1569051e-150AM156905.1 Zea mays mRNA for transcription factor MYB8 (myb8 gene).
GenBankEU9639111e-150EU963911.1 Zea mays clone 274019 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977235.11e-102myb-related protein Zm38
TrEMBLK3YEC21e-100K3YEC2_SETIT; Uncharacterized protein
STRINGSi012585m1e-101(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-86myb domain protein 4