PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc03643.1.g00060.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 186aa MW: 20694.6 Da PI: 9.6684 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170 | 7.4e-53 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeel+ +yL++++++ ++++ +i++vdiyk++PwdLp k+ ++ ewyfFs+rd+ky++g r+nra+ sg Zpz_sc03643.1.g00060.1.sm.mk 15 LPPGFRFHPTDEELILHYLRNRAASVPCPV-PIIADVDIYKFDPWDLPCKAVYGDGEWYFFSPRDRKYPNGIRPNRAAGSG 94 79****************************.88***************66666789************************* PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatg+dk+++++ +ge vg+kk Lvfykgr pkg+kt+W+mheyrl Zpz_sc03643.1.g00060.1.sm.mk 95 YWKATGTDKPIHDSaTGESVGVKKALVFYKGRPPKGTKTSWIMHEYRL 142 ************9988999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.01E-61 | 5 | 147 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.444 | 15 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.2E-28 | 16 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MEETMVSTQA AAPLLPPGFR FHPTDEELIL HYLRNRAASV PCPVPIIADV DIYKFDPWDL 60 PCKAVYGDGE WYFFSPRDRK YPNGIRPNRA AGSGYWKATG TDKPIHDSAT GESVGVKKAL 120 VFYKGRPPKG TKTSWIMHEY RLAAEDPLAA AAAYRPPVKF RNASMRVHAR APSASVSVSV 180 SDWRTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-64 | 15 | 142 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc03643.1.g00060.1.sm.mk |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP098909 | 1e-159 | FP098909.1 Phyllostachys edulis cDNA clone: bphyem117n24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161118.1 | 3e-98 | protein ATAF2-like | ||||
Swissprot | Q8H4S4 | 3e-75 | NAC10_ORYSJ; NAC domain-containing protein 10 | ||||
TrEMBL | A0A287H7F2 | 2e-98 | A0A287H7F2_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287H7P6 | 5e-98 | A0A287H7P6_HORVV; Uncharacterized protein | ||||
STRING | Traes_2BS_924D34AA1.1 | 2e-96 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 4e-70 | NAC-like, activated by AP3/PI |
Publications ? help Back to Top | |||
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