PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03447.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 269aa    MW: 28905.2 Da    PI: 9.0064
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03447.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.56.8e-17154185132
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                                   Cs C t +Tp+WR+gpdg+ tLCnaCGl+y +
  Zpz_sc03447.1.g00030.1.am.mk 154 CSRCTTMETPQWREGPDGPGTLCNACGLHYNL 185
                                   *****************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.38E-13146189No hitNo description
PROSITE profilePS5011413.086148186IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-11148202IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.4E-14152190IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.16E-13153183No hitNo description
PfamPF003202.4E-14154184IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MAATELESAY LGGVGRIIRQ GAWHILELEP LRQGGRILYL GGVSCEEDPR RPLDYVMKGL  60
EDGSLDDPRK GDGEQKGALT AEPAPGGALE VPKEDNDVGG LARALRGAAA PAAPPAAPGS  120
LETPPADPSS LEAGGSGTRP VERRRRNRQR NRTCSRCTTM ETPQWREGPD GPGTLCNACG  180
LHYNLDLKRP ERRRYGRRRP GPRAQQPRSR RQRQASRGAA AEEQAAQQDL QPLRHPENAT  240
VARGPDGPAT PAASGTNREI MEGKVAENP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03447.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7139122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-07GATA transcription factor 11