PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc03401.1.g00010.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WOX | ||||||||
Protein Properties | Length: 237aa MW: 25305.1 Da PI: 8.4823 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.6 | 7e-21 | 6 | 66 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+eql +Lee++++ r+p+a+e+++++++l +++ ++V++WFqN++a+e++ Zpz_sc03401.1.g00010.1.sm.mk 6 STRWCPTPEQLMILEEMYRSgVRTPNAAEIQQITAHLayygRIEGKNVFYWFQNHKARERQ 66 58*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 121.2 | 4.1e-39 | 5 | 67 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++tRW+PtpeQ++iLee+y+sG+rtPn++eiq+ita+L+ yG+ie+kNVfyWFQN+kaRerq+ Zpz_sc03401.1.g00010.1.sm.mk 5 PSTRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHKARERQR 67 689***********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.463 | 2 | 67 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.8E-6 | 4 | 71 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.11E-11 | 4 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.88E-4 | 5 | 60 | No hit | No description |
Pfam | PF00046 | 1.5E-18 | 6 | 66 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-8 | 8 | 66 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MPQTPSTRWC PTPEQLMILE EMYRSGVRTP NAAEIQQITA HLAYYGRIEG KNVFYWFQNH 60 KARERQRLRR RLCARHQQQY ATSGAPPSAA DGSGAAAGVH PSYAATSFIM PQPHHLGYLG 120 QQATTLPVVH HHPAAAAGGG GGGGGNNNKQ IMAAAAAGAY DGGAALYNNT SHQQEEWTME 180 LSNCSASPGS SDDGTMLPPC CRRPLRTLDL FPTKSSTAGL KDECGSSKSS SCSTSTN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in leaf formation. {ECO:0000269|PubMed:15169755}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc03401.1.g00010.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ536578 | 2e-89 | AJ536578.1 Zea mays mRNA for homeodomain transcription factor (prs gene). | |||
GenBank | BT066120 | 2e-89 | BT066120.1 Zea mays full-length cDNA clone ZM_BFb0350F05 mRNA, complete cds. | |||
GenBank | EU969087 | 2e-89 | EU969087.1 Zea mays clone 325979 WUSCHEL-related homeobox 3B mRNA, complete cds. | |||
GenBank | JX469942 | 2e-89 | JX469942.1 Zea mays subsp. mays clone UT3202 HB-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105160.1 | 4e-67 | WUSCHEL-related homeobox 3A | ||||
Swissprot | Q70UV1 | 3e-68 | WOX3A_MAIZE; WUSCHEL-related homeobox 3A | ||||
TrEMBL | B6TVS2 | 3e-66 | B6TVS2_MAIZE; WUSCHEL-related homeobox 3B | ||||
STRING | GRMZM2G069028_P01 | 2e-66 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2177 | 38 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 1e-34 | WOX family protein |
Publications ? help Back to Top | |||
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