PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc03394.1.g00020.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 427aa MW: 45715.8 Da PI: 6.7813 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 28.5 | 3e-09 | 210 | 232 | 1 | 23 |
---SS-EEEEEEE--TT-SS-EE CS WRKY 1 ldDgynWrKYGqKevkgsefprs 23 ldDg +WrKYGqK++ g+++prs Zpz_sc03394.1.g00020.1.am.mk 210 LDDGISWRKYGQKDILGAKYPRS 232 58********************8 PP | |||||||
2 | WRKY | 37.7 | 4e-12 | 243 | 284 | 21 | 59 |
-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 r+Y+rCt++ +C++ k+v+r++ dp +++++Y+g H++ Zpz_sc03394.1.g00020.1.am.mk 243 VRAYFRCTHRhsqDCHASKQVQRADGDPLLFDVVYNGYHTCA 284 69*******98999**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.5E-24 | 196 | 285 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-19 | 204 | 285 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.134 | 205 | 281 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-32 | 210 | 285 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-6 | 211 | 232 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.1E-11 | 244 | 283 | IPR003657 | WRKY domain |
PROSITE pattern | PS00678 | 0 | 378 | 392 | IPR019775 | WD40 repeat, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MNFHQVDSSS RSSIGTLISQ RGALVTNISP SERPVPWPRP KTVKAPSSST HLPKSKRSWM 60 TATEQRAAER AVAAMEGLSE ERRALVGELV QVLEMARQLD AHMAGQQLGG GGEERCRALV 120 ATMRASIDRS VRIARSCCAD EAAGRLPVLG RPESQPSGGG DGSPLSAGSD QAGDSRGRGN 180 AAGQCKKRKS TQPKWKTQVR VSAVQDVAPL DDGISWRKYG QKDILGAKYP RSVSAALDPY 240 FLVRAYFRCT HRHSQDCHAS KQVQRADGDP LLFDVVYNGY HTCAQAQAAA RPSNQETPHS 300 ASGENSPPQQ TQAGLEQTTG DSTPMFERTV QPFALPSNNP AYDDGCKTSS GFPAGSVVAA 360 SAFMSSPAVE ATPESQLVTS SSSNHAVGVW NVPEVELAST TNSPMGDMDF MFPLDDAADF 420 LEDAEYF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 4e-17 | 207 | 283 | 5 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc03394.1.g00020.1.am.mk |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003212 | 2e-45 | AP003212.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0049H05. | |||
GenBank | AP003294 | 2e-45 | AP003294.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0694A04. | |||
GenBank | AP014957 | 2e-45 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY676926 | 2e-45 | AY676926.1 Oryza sativa (indica cultivar-group) transcription factor WRKY98 (WRKY98) mRNA, complete cds. | |||
GenBank | CP012609 | 2e-45 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458250.1 | 1e-107 | probable WRKY transcription factor 41 | ||||
TrEMBL | A0A0A9VEZ7 | 1e-112 | A0A0A9VEZ7_ARUDO; Uncharacterized protein | ||||
STRING | Sb03g029920.1 | 1e-106 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3355 | 31 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 2e-33 | WRKY family protein |