PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc03303.1.g00060.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 246aa MW: 27424.4 Da PI: 11.0236 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 102.1 | 2.1e-32 | 148 | 198 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRrng+lKKA+E+SvLCdaevavi+fs++gklyey++ Zpz_sc03303.1.g00060.1.am.mk 148 KRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAT 198 79***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.095 | 140 | 200 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.5E-43 | 140 | 199 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.66E-30 | 141 | 201 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.34E-41 | 141 | 200 | No hit | No description |
PRINTS | PR00404 | 5.8E-32 | 142 | 162 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 142 | 196 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-27 | 149 | 196 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-32 | 162 | 177 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-32 | 177 | 198 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MVHGFRRTAM LLRLDWLFAP PQEQGQGMSE SSPSLPTSAG MVMTRWTDAD AGRSAVELQL 60 HDPRRRLHHL PIASPNWSST ASTTPWKPRY SLRLPPHASS TPPRGDRSLF FSSLSCCLSH 120 RRSIHLTRGC EISRQETRAM GRGKVQLKRI ENKINRQVTF SKRRNGLLKK AHEISVLCDA 180 EVAVIVFSPK GKLYEYATDS RYPPVTVGER GEEVVAAAAA LQAQGQAQAQ LRVGNLPPWM 240 LSHLNA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-19 | 140 | 198 | 1 | 59 | MEF2 CHIMERA |
6byy_B | 2e-19 | 140 | 198 | 1 | 59 | MEF2 CHIMERA |
6byy_C | 2e-19 | 140 | 198 | 1 | 59 | MEF2 CHIMERA |
6byy_D | 2e-19 | 140 | 198 | 1 | 59 | MEF2 CHIMERA |
6bz1_A | 2e-19 | 140 | 198 | 1 | 59 | MEF2 CHIMERA |
6bz1_B | 2e-19 | 140 | 198 | 1 | 59 | MEF2 CHIMERA |
6bz1_C | 2e-19 | 140 | 198 | 1 | 59 | MEF2 CHIMERA |
6bz1_D | 2e-19 | 140 | 198 | 1 | 59 | MEF2 CHIMERA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc03303.1.g00060.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU963061 | 2e-77 | EU963061.1 Zea mays clone 257029 MADS-box transcription factor 15 mRNA, complete cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1151 | 37 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 2e-34 | AGAMOUS-like 8 |