PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03258.1.g00060.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 328aa    MW: 36847.6 Da    PI: 5.8174
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03258.1.g00060.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-05189214123
                                     EEET..TTTEEESSHHHHHHHHHH.T CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                     y+Cp   C+k + +++ L+ H++t H
  Zpz_sc03258.1.g00060.1.sm.mkhc 189 YVCPyeGCDKAYIHSYKLNLHLKTmH 214
                                     99*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.26E-6184213No hitNo description
Gene3DG3DSA:3.30.160.602.9E-10185214IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0031189214IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.954189214IPR007087Zinc finger, C2H2
PROSITE patternPS000280191214IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDGHATMTET QRLAEVERER QLLLQEARVP AMAQEYARHA LQLRALSPII DFDLKQGGLH  60
YNRMSYFDET FDLDEESPHG PMRYTDRVST DAHQYRPCRG VNIFAVKIAS SDIGFPIHVY  120
GTVIARDNID ERFLLRRDRN HCQLINSETG APVAVQHTSP LPPPPPVEKP QSSMKSSTAA  180
TASYAERPYV CPYEGCDKAY IHSYKLNLHL KTMHPEYGQE ENGKHTAAGH HAVNEPTYQF  240
NYTEIADVAP NPKRSKTTSA HKSSSSKVHN VKVSSAMPTN TGCGRSQWSG KATYEDDSEE  300
TEEDPGNNLE GGWRYGSNAD DDETQDEY
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03258.1.g00060.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001136556.18e-73uncharacterized protein LOC100216676
RefseqXP_025809834.18e-73zinc finger transcription factor YY1-like
TrEMBLA0A3L6RD386e-73A0A3L6RD38_PANMI; Putative zinc finger protein
STRINGPavir.Cb01849.1.p2e-74(Panicum virgatum)
STRINGGRMZM2G175000_P013e-72(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.24e-11C2H2 family protein